Query= MSMg01no139_o20.b1 MSMg01no139_o20.b1 CHROMAT_FILE:
MSMg01no139_o20.b1 PHD_FILE: MSMg01no139_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:29 2005
(684 letters)
>mm_chr2_43453566_43454648
Length = 1083
Score = 1226 bits (634), Expect = 0.0
Identities = 671/684 (98%), Gaps = 7/684 (1%)
Strand = Plus / Plus
Query: 5 gaattcatcagttaaac-ctcattttcaatggcctcactccaa-caaacttaccctggaa 62
||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 gaattcatcaggtaaacactcattttcaatggcctcactccaaacaaacttaccctggaa 260
Query: 63 tttatcaaacttattattccattgacttctatgtttctttttttt-ccccattttttatt 121
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 261 tttatcaaacttattattccattgacttctatgtttctttttttttccccattttt-att 319
Query: 122 aggtatttagctcatttacatttccaatgctagaccaaaagtcccccatacccacccccc 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 aggtatttagctcatttacatttccaatgctagatcaaaagtcccccatacccacccccc 379
Query: 182 cc--actcccctacccacccactccccctttttggccctggcgttcccctgtactggggc 239
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccccactcccctacccacccactccccctttttggccctggcgttcccctgtactggggc 439
Query: 240 atataaagtttgcaagtccaatgggcctctctttgcattgatggccaactaggccatctt 299
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 440 atataaagtttgcaagtccaatgggcctctctttgcagtgatggccgactaggccatctt 499
Query: 300 ttgatacatatacagctagagacaagagctccggggttctgcttagttcatattgttgtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgatacatatacagctagagacaagagctccggggttctgcttagttcatattgttgtt 559
Query: 360 ccacctatagggttgcagttccctttagttccttgggtgctttctctagttcctccattg 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccacctatggggttgcagttccctttagttccttgggtgctttctctagttcctccattg 619
Query: 420 ggggccctgtggtccattcaatagctgactgtagggaactcacaagcaggcgtctgagta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggggccctgtggtccattcaatagctgactgtagggaactcacaagcaggcgtctgagta 679
Query: 480 aacaatgtaagaccactgtatgttcctgaacattatatattttctcttacaccttaatga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aacaatgtaagaccactgtatgttcctgaacattatatattttctcttacaccttaatga 739
Query: 540 actttgtgatagatattttccaaagtgttggtgagaaaaatagttctagatttgtttgtt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 actttgtgatagatattttccaaagtgttggtgagaaaaatagttctagatttgtttgtt 799
Query: 600 tgtttttttaaagaaacatgtagaaagttgagccacacacaaaaggtgtgagagctctga 659
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgtttttt-aaagaaacatctagaaagttgagccacacacaaaaggtgtgagagctctga 858
Query: 660 gttgccaagtcacaagggtaggct 683
||||||||||||||||||||||||
Sbjct: 859 gttgccaagtcacaagggtaggct 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_o20.g1 MSMg01no139_o20.g1 CHROMAT_FILE:
MSMg01no139_o20.g1 PHD_FILE: MSMg01no139_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:29 2005
(641 letters)
>mm_chr2_43536795_43537835
Length = 1041
Score = 574 bits (297), Expect = e-168
Identities = 309/313 (98%)
Strand = Plus / Minus
Query: 327 ggttcaattcctagtatccacacagcagctctgtaactccagtctcaggtgatctgatgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ggttcaattcctagtatccacacagcagctctgtaactccagtctcaggtgatctgatgt 982
Query: 387 atcttctagtttctgtaaacatggcatgcacatgaggtacagacataaatgcagtcaaaa 446
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 atcttctagtttctgtaatcatggcatgcacatgaggtacagacataaatgcagtcaaaa 922
Query: 447 tacccatacacataaaaataaataaataaataaaaatttaaacagtgattgaggaagatg 506
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 921 tacccatacacataaaaataaataaataaataaaattttaaacagtgattgaggaagatg 862
Query: 507 tccagtgttgacctctggcctcacaagagtacatagggtcaagtacctcatcccttatac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tccagtgttgacctctggcctcacaagagtacatagggtcaagtacctcatcccttatac 802
Query: 567 ataagcacttacatgtcctttacacagacactcagaaacacaaacacatggacacacaca 626
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 801 ataagcacttacatgtcctttacacagacacacagaaacacaaacacatagacacacaca 742
Query: 627 ccactgggggggg 639
|||||||||||||
Sbjct: 741 ccactgggggggg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
