TCCAGNNNNTGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCACCTGACGAAACCAAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGCTGGTGGGACTGCAAGCTGATACAACCACTCTGGAAATCTGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGATGTCCCAACCGGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGAAATTCCTA
GGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATC
ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCA
GAAACTTAGTATGCCCGAGATATAAGATACAATTTGCTAAACG

CCTAANANCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCC
CCATTTTTAATGGGGTTATTTGATTTTCTGGATTCCAGCTTCTTGAGTTC
TTTATATATATTGGATATTAGTTCCCTATCTGATTTAGGATTGGTAAAGA
TCCTTTCCCAATCTGTTGGTGGCCTTTTTGTTTTATTGACAATGTCTTTT
GCCTTACAGAATCTTTAAATTTTATGAGGTCCCATTTGTTGATTCTCAAC
CTTACAGTACAAGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGCC
CGTATCTTCGATGCTTTTACCCATTTTCTCCTCTATAAGTTTCAAACAAT
GTTAAAGCAGACCAATGCAAGCTGCCTCTAAACTCTCTACCTTCAATATA
CATGTTTCTGTATCTACCTCTGCATAAGCTTTATAATTGTTTACTATATT
TCTTTAAATACCCTGTATTTAATTTATAAAACAAAAAAAAGATGTAAAAT
GTTTGTTTTAATCTGTCATTCACATGAAGAAAGATAAGAGGTCCAGTATG
TAGCTCCCATAGCTCATTTGATTTTGATTAATAATAGCAGTGAGCCAGGT
TGAACTACATTGCTTGGAATGAAACCATGCTTTGGGGGGTAA

Query= MSMg01no140_a03.g1 MSMg01no140_a03.g1 CHROMAT_FILE:
MSMg01no140_a03.g1 PHD_FILE: MSMg01no140_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:35 2005
         (610 letters)



>mm_chr2_57365528_57366539
          Length = 1012

 Score = 1125 bits (582), Expect = 0.0
 Identities = 604/612 (98%), Gaps = 2/612 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgagccccatttttaatggggttatttgattttctggattccagcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgagccccatttttaatggggttatttgattttctggattccagcttc 260

                                                                       
Query: 61  ttgagttctttatatatattggatattagttccctatctgatttaggattggtaaagatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 261 ttgagttctttatatatattggatattagttccctatctgatttagggtaggtaaagatc 320

                                                                       
Query: 121 ctttcccaatctgttggtggcctttttgttttattgacaatgtcttttgccttacagaat 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcccaatctgatggtggcctttttgttttattgacaatgtcttttgccttacagaat 380

                                                                       
Query: 181 ctttaaattttatgaggtcccatttgttgattctcaaccttacagtacaagccattgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttaaattttatgaggtcccatttgttgattctcaaccttacagtacaagccattgctg 440

                                                                       
Query: 241 ttctgtttaggaatttttcccctgtgcccgtatcttcgatgcttttacccattttctcct 300
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 441 ttctgtttaggaatttttcccctgtggccgtatctttgatgcttttacccattttctcct 500

                                                                       
Query: 301 ctataagtttcaaacaatgttaaagcagaccaatgcaagctgcctctaaactctctacct 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ctataagtttcaaacaatgttaaagcagaccaatgcaagctgcctttaaactctctacct 560

                                                                       
Query: 361 tcaatatacatgtttctgtatctacctctgcataagctttataattgtttactatatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaatatacatgtttctgtatctacctctgcataagctttataattgtttactatatttc 620

                                                                       
Query: 421 tttaaataccctgtatttaatttataaaacaaaaaaaa--gatgtaaaatgtttgtttta 478
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 621 tttaaataccctgtatttaatttataaaacaaaaaaaaatgatgtaaaatgtttgtttta 680

                                                                       
Query: 479 atctgtcattcacatgaagaaagataagaggtccagtatgtagctcccatagctcatttg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgtcattcacatgaagaaagataagaggtccagtatgtagctcccatagctcatttg 740

                                                                       
Query: 539 attttgattaataatagcagtgagccaggttgaactacattgcttggaatgaaaccatgc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attttgattaataatagcagtgagccaggttgaactacattgcttggaatgaaaccatgc 800

                       
Query: 599 tttggggggtaa 610
           ||||||||||||
Sbjct: 801 tttggggggtaa 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space:   601200
Effective search space used:   601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)