BAC Information

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BAC

Clone NameMSMg01-140L12
Chromosome2 (Build37)
Map Location 146,906,989 - 146,907,287
singlet/doubletsinglet
Overlap genenone
Upstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2
Downstream geneNkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik, LOC100043820, Foxa2, LOC383752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L12.T7 (MSMg01no140_l12.b1)MSMg01-140L12.TJ (MSMg01no140_l12.g1)
ACCAG345781AG345782
length757709
length of high quality
(start - end)
108 (68 - 175)299 (74 - 372)
definitionCHROMAT_FILE: MSMg01no140_l12.b1 PHD_FILE: MSMg01no140_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:32 2005CHROMAT_FILE: MSMg01no140_l12.g1 PHD_FILE: MSMg01no140_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCACTATTATCTCAGGCTTACCTTGAAATCATAAGATTCACTTGCTTC
TCCCTCTGTCCCCTGAGTGCTAGGATTAAAGGCATGCAACTCCACACCCG
ACTATCAACAGTTTTGCATTAGGAATATCAGTTTGTACTTTTCTTTTTTG
TTGTATCTCTGTCTGCCTTTGACCCCACGCCAACGCTGGCTTAATGAATT
GACTTTCCCATTCTCCATCCTCATTACACTCCGATAAGTATTGCTGCCAA
CCCACTTCGCACATTTTATCACTGAGTCAGCCCATCCCTCCCGCCTTTCC
CTTCTTATCGTCTTTCTTCTCTTTTCGCCTCTCATCCCCCCCCTCCCTTT
TTGCTCTTCTATGCTCCCTCTCCTGCCCCCCCCCGCCCTTCTTCCCCCCC
CTCTCCCCCACCCCCCTCCCTCCTCTTTTCTTCTCGTCGTTCCTCCCCTC
TCCCTTTTTTTTTCTCCATTTTCTTATCCACTCTCTCCCCCTCACCCTCT
TACTTCCCACCCTTTCCATGTCCCACGTTCCTTCTTACCCCTCTTTTTTA
CTTCCCTCTATTCCATATTAATCCCTCCCTCTTACCTCCCTAATTACCTC
ATACCCCCTCTAATTTATTATTCAACACACACCCCACACTCCCCTTTACA
CCACCCACTTTCACTATCACTAACCTATCTTTAATTCATTCTCTCCCCTC
TACCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTTTCTGATTAATGCAAAGCAAAAG
CCTTTTCCTTCTTTTGCAGTTGGTGCTTCACAGATCCTTTATAAAAATAC
AAACGGCTAGACTAGGTGAAACTCATTAACTGAAGAGGAGGATAAGTGTC
TCCACAGCCAAGAGGGAGAACTGGAGCAGGGGCTGGGTGGAACAAAGCCC
TCTCAAAGTTTAGCAGAGGCCATAGCAAAACCGGGTTTCAGAAATGCTAA
CTCTGCAGATGTGACATTTTGCAGTACATTTTGGCGTCTAGCATCTTTTC
TAGTGGAGGAATAGAAACCAAAATGCAGAATGAAAGTTGCAGAGGGTAAC
AGCAGGGATTGCAGGTACTTCCCTGTAATCTTCATTAGAATGCATATTAA
AGCATGGGAGTGTGTGCAAATTTGAAGGACACAAGAAGGATGTTTTGCAT
ACGCAAGGGTAAGAGTGTAACCCAGTTGTCCTATTTAAGGCTTTGCTTAA
TAATACTCTCTATAGTTCAGATCCATTACGTAACATCATTTATGTTCAAA
CTCCTTTCAGCCAGTAGTTGTCTACTTTCACTTTTAAGCCTACCCCTAGA
CTTCATTCTGCACCCCCAAGACCCCTCTCCTTACTCTCGTTTGGTTTATT
ACTTGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l12.g1 MSMg01no140_l12.g1 CHROMAT_FILE:
MSMg01no140_l12.g1 PHD_FILE: MSMg01no140_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:32 2005
         (299 letters)



>mm_chr2_146906789_146907487
          Length = 699

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttctgattaatgcaaagcaaaagccttttccttcttttgcagttggtgcttcacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cactttctgattaatgcaaagcaaaagccttttccttcttttgcagttggtgcttcacag 440

                                                                       
Query: 61  atcctttataaaaatacaaacggctagactaggtgaaactcattaactgaagaggaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcctttataaaaatacaaacggctagactaggtgaaactcattaactgaagaggaggat 380

                                                                       
Query: 121 aagtgtctccacagccaagagggagaactggagcaggggctgggtggaacaaagccctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagtgtctccacagccaagagggagaactggagcaggggctgggtggaacaaagccctct 320

                                                                       
Query: 181 caaagtttagcagaggccatagcaaaaccgggtttcagaaatgctaactctgcagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caaagtttagcagaggccatagcaaaaccgggtttcagaaatgctaactctgcagatgtg 260

                                                                      
Query: 241 acattttgcagtacattttggcgtctagcatcttttctagtggaggaatagaaaccaaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acattttgcagtacattttggcgtctagcatcttttctagtggaggaatagaaaccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)