Query= MSMg01no140_m21.b1 MSMg01no140_m21.b1 CHROMAT_FILE:
MSMg01no140_m21.b1 PHD_FILE: MSMg01no140_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:39 2005
(666 letters)
>mm_chr2_143575209_143576271
Length = 1063
Score = 1154 bits (597), Expect = 0.0
Identities = 616/623 (98%), Gaps = 3/623 (0%)
Strand = Plus / Minus
Query: 3 ggaattccttaaactctcctctctagcttttgaaatacatagagagcactgccacggttg 62
|||||||||||||| ||| |||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 620 ggaattccttaaaccctcttctctagcttttgaaatacatagagaccactgccactgttg 561
Query: 63 gtcaccctactctgcagttcctcacctttcactatgatttagttcccactgagcaaactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcaccctactctgcagttcctcacctttcactatgatttagttcccactgagcaaactt 501
Query: 123 tccctatgcaccaggtttgaaacaaagtatttttttttcttggagtaataaaaaacataa 182
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 tccctatgcaccaggtttgaaacaaagta-ttttttttcttggagtaataaaaaacataa 442
Query: 183 gattctgaatactattcatgtgcagctaagcatgtaagcaagatatttacctaaagaaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattctgaatactattcatgtgcagctaagcatgtaagcaagatatttacctaaagaaaa 382
Query: 243 aaaaaaggaagtcacatttatatgtttagtagcaaaacaggatggaaaaagatgtagtct 302
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaa--gaagtcacatttatatgtttagtagcaaaacaggatggaaaaagatgtagtct 324
Query: 303 gtagttcaagtctctgtcaatcacatgtctgttgagaggactaccaaggctgctatgatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtagttcaagtctctgtcaatcacatgtctgttgagaggactaccaaggctgctatgatg 264
Query: 363 ttatagcagaagtagttttaaagatatgtcaacacagacccactgggaattactggaaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatagcagaagtagttttaaagatatgtcaacacagacccactgggaattactggaaat 204
Query: 423 gagctgggtgtggtggtgcatgcctttaatcttagcactagggaggcagaagaatggtag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gagctgggtgtggtggtgcatgcctttaatcttagcactagggaggcagaagaatggtag 144
Query: 483 aatgaatttgaggctagcctggtctacatagtgagctccatgatagccaaagttacacag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aatgaatttgaggctagcctggtctacatagtgagctccatgatagccaaagttacacag 84
Query: 543 tgagaccctgtctcaaaacaacaaaaaagtttctctggaatagctttagtagaacaagtg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tgagaccctgtctcaaaacaacaaaaaagtttctctggaatagctttagtagaacaagtg 24
Query: 603 gactcctaaatcactgtatggta 625
|||||||||||||||||||||||
Sbjct: 23 gactcctaaatcactgtatggta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1063
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1053
Effective search space: 690768
Effective search space used: 690768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_m21.g1 MSMg01no140_m21.g1 CHROMAT_FILE:
MSMg01no140_m21.g1 PHD_FILE: MSMg01no140_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:39 2005
(354 letters)
>mm_chr2_143510722_143511475
Length = 754
Score = 414 bits (214), Expect = e-120
Identities = 254/272 (93%), Gaps = 10/272 (3%)
Strand = Plus / Plus
Query: 1 acacacatgctcacacatacacacacagggtgtatataaggtggtataaggatgtaatgt 60
||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct: 201 acacacatgctcacacatacacacacagggtatatataaagtggtataagaatgtaatgt 260
Query: 61 cctgaaaaccgttgactttaaggaatataactggcaaagaccctagctgtggcatcctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaaaaccgttgactttaaggaatataactggcaaagaccctagctgtggcatcctga 320
Query: 121 agattacatacctgtagcagtgagactatacgactatacttcctatagttgctccaagcc 180
||| |||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 321 agactacatacctgtagcagtgagactatacg--------tcctatagttgctccaggcc 372
Query: 181 agtattggggtactgaggcaggcctacctccctggaaggtcacagggcttcagaaatgcc 240
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtattggggtgctgaggcaagcctacctccctggaaggtcacagggcttcagaaatgcc 432
Query: 241 cagtaatgcatatatatatatatat-atatat 271
|||||||||||||||| ||||| || ||||||
Sbjct: 433 cagtaatgcatatatacatata-atcatatat 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
