BAC Information

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BAC

Clone NameMSMg01-140O06
Chromosome2 (Build37)
Map Location 22,474,153 - 22,474,363
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr158, LOC637235, Myo3a, LOC100041703, Myo3a
Downstream geneGad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140O06.T7 (MSMg01no140_o06.b1)MSMg01-140O06.TJ (MSMg01no140_o06.g1)
ACCAG345909AG345910
length697715
length of high quality
(start - end)
214 (69 - 282)---
definitionCHROMAT_FILE: MSMg01no140_o06.b1 PHD_FILE: MSMg01no140_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:46 2005CHROMAT_FILE: MSMg01no140_o06.g1 PHD_FILE: MSMg01no140_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTCAAGAAGAGCGCGGA
ATTCATATCTATTCCCAATTCCTCTTCTCTTGATTATTATACTGCTAAAT
AAAGTAAGCATCCTGGAAAAGCCTGTTTTCCATGGCCTTGTCTACCTTGT
GCCTTGAGGGCTTCTGTCTGACAAACATCCTGGGCCCGTGGCAGGAGTTA
AGATGACCTCTGTCTTCATCAACAGATTTCCATCCCTCAGTCGAGGTAAA
GCACAGTCTAGCTTACACTTTACCTAGAAACGTGGGCTACCAACAAACTT
CCTAACCTCACCATTCATACTCTTCCTTCCCAGGCAGTCTGCGCTGGACT
GGTCCTCTGACTGAGCACCATCAGATTTTAAGGTTTACTCTGTAGATTTG
AAGTATCTCTCTCCTCCTTAGAAGCTGGTCACACAATAGTAATCACCATC
TCTTTGTCTGTTAGTTATGATTTCCTTACCACTTATTTGTATTCTATTCA
GCAGTTATTATTATTAGTATTAGGATTTAGCATTTATCCTTCTTCCCCTT
TTACTTCCCTTTTTTTTTTATCCCCCTTTCCTCTTTTATATTTTTTTTTT
CCCCATTTCTTTTACCTCATTCTTTTTTCCTTTTTACCATTTCTATTCCC
CCTTTTCCCCCTTATCCTTTTTCTATTCACCCACCCTATTTCCCCGC
CTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCGAAACTCATCATCACAGTTGATCATCCCTT
CTGCTAGAGGAATCACTGCCCTCCAAAACTTACTGTACTTGGACATTTGC
GTGAGCTACAGCGTTGGCCTGCACGCGGTACTGTCAGTCTCTTCATCTAG
GCTACTTGGTTTGTCATTTGAATGATACCCCACCTTTTACGGCTCCAGGT
GCGGAGCCACTTGAGTAGAGTGTACTGCTTAGTTTTGTGTCAACTTGACA
TAGCTGGAGTTATCATAGAGAAAGGAGCTTCCTCTGAGGAAATGTCTCCA
TGATATCCAGCTGTAACGCCTTCTCTCCTCTACAGACCAAGGCTCATAGG
CTCCTTATGTACGCTGCTCTCTCTGCTCCATCACTCTTATCTCCTCTCCA
GAGTATCTTGAGTCAGTCTCGTGATCCTCACTCTCTCCTGCACATCCCTC
CATGTTCTCTGTCTCACTCTTCTGCTTCCTGACTCGTCTGTACTCTCATC
CTCGCCTCCTTTCGCTGTGCATCGTTCTCCTGCATCTCGTCATCTGCTTA
ACTCCTTCCCTCCTCAATCTCTGTCTTCTCGTTCTTGTTGCCCGCTTCCT
CAATTTCTCACTCTTCGCCTCCTACCTCCGCTTTCGATTACTTATTCCTC
CCCTCTCTTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_o06.b1 MSMg01no140_o06.b1 CHROMAT_FILE:
MSMg01no140_o06.b1 PHD_FILE: MSMg01no140_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:46 2005
         (214 letters)



>mm_chr2_22473950_22474563
          Length = 614

 Score =  400 bits (207), Expect = e-116
 Identities = 210/211 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ctcttctcttgattattatactgctaaataaagtaagcatcctggaaaagcctgttttcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctcttctcttgattattatactgctaaataaagtaagcatcctggaaaagcctgttttcc 263

                                                                       
Query: 64  atggccttgtctaccttgtgccttgagggcttctgtctgacaaacatcctgggcccgtgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggccttgtctaccttgtgccttgagggcttctgtctgacaaacatcctgggcccgtgg 323

                                                                       
Query: 124 caggagttaagatgacctctgtcttcatcaacagatttccatccctcagtcgaggtaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 caggagttaagatgacctctgtcttcatcaacagatttccatccctcagccgaggtaaag 383

                                          
Query: 184 cacagtctagcttacactttacctagaaacg 214
           |||||||||||||||||||||||||||||||
Sbjct: 384 cacagtctagcttacactttacctagaaacg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)