BAC Information

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BAC

Clone NameMSMg01-141B07
Chromosome2 (Build37)
Map Location 141,519,189 - 141,519,983
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141B07.T7 (MSMg01no141_b07.b1)MSMg01-141B07.TJ (MSMg01no141_b07.g1)
ACCAG346049AG346050
length1,2201,163
length of high quality
(start - end)		811 (41 - 851)674 (84 - 757)
definitionCHROMAT_FILE: MSMg01no141_b07.b1 PHD_FILE: MSMg01no141_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:05 2005CHROMAT_FILE: MSMg01no141_b07.g1 PHD_FILE: MSMg01no141_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTCTNNNNNNTGCAGTGGGCGCTAACGACTCCTAAGGGAGAGGAT
CCGCGGAATTCCACATGGCCAAGAAAGACCTGTAAAATTTATGTCCTGAA
TATAAGTAATCAATTAGCTACGAGTTCTGGGCAATTGACAATTGAGAAGA
ACATGTTAAACACTAGAAGGATGTGATTCAAGATTTCAAATATGAGATAT
TCTAAACAATTTGGTTTATTCAACAAATAAAACAACAAAGAAGAGAGAGA
AGCCAAGAAGAGAGAGAAAAGGGAGATAAAAGTAAGAGGCTGATAAAACA
GCAAAGAATAAAGATTACTTCTTATTTATCAATTAAAAGATGCATAAGGA
AATCTGGCATTTTGGACAATTTCTACATTTTGATAAGGACATCATTTTAA
GAATCTTAATGTTCTGTGTTTACATGCAATCTATACCTTAATCCAAATTT
GGGATAGAGGTTGATTTAAAACATGATAACTGTATGCATCATATGGACCC
CATTTGGATTCTACGTACCCAAATACACTGAAAACAAATGAGATAACAGG
AAAAACATGAGTTATGACTAGATAATTCCTCCTATTAATGTTTTATGGAT
TTTTTTTTCTCATAGAGTTTCTGTCTTTTAGAAGCACATTCTTAACAACC
AGGTAGATACTGAGATAGCCTCAGGCCTAGGTCAGCAAGGTCTGGGGAAG
AGAGGACACCTACAAGTGAATCTAACAGTGAATGTGCAGCCCATGAAGTG
CTACACAGAAGAAATTCTATGCAAGGGAGGTCCTTCAATGGCACAGACTT
TTAATAAAATTTTACCAGCAAGTAATGGCATGTTTTGCAACAATCAAGAT
GTATCCAGCTCATCTCTTGCACCAGAGCCTAGGGCAAGTGTAAAAGCATA
CCTATTTGTCATGCTTAGTTATCCTGAAATTACTGCATGCCTCCTACTCC
CTCCCTCCTTTACATCACAGAATGCAAAATTCCTTAACCATTTTAATCAA
TGCTTAAGGAATTTCCAATTTCCTTAAAAAAAATTTTAATCCACCCAGTA
CAAAAATCATGGTGCCCAATTAAATTTCCCCTCCCCCTTTAATAAATGGT
TTTAAAAAATAGTTTTTTGGGAAAAAAATAAAACAACACTCCTGGGGGGG
AAAAATTTTTTAAAAAACAAAATTTCTTTTTAACAGTTTTCTCGAAGGAC
CCTCTCCACAAAATTTTCCT

CCTTCTTTTTTNNNAAGAGGTGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGAAGGGTTTGGCTAGTTGAT
ATTGTTGTTCTTCCAATACAATCCACTTCAGCTCTTTCAGTCATTCTTCT
AACTCTTCCTTTGGGGTCCCTGGGATTAGTCCAATGATTGGCTATAGGTG
TCTGCATCTGTCTTAGTCAGGTGCTAGTAGAGCCTCTCAGAGGACTGCTA
TACCAGGGTCCTTTCTGCAAGTACTTCTTGGTATCGACAATCATGTCAGG
GTTTAGTGTCTGCAGATGGGATGGATCCAAAGACAGGACAGCCTTTGGAC
TGCCTTTCCTTAAGTCTCTGCTCCATTTTGTTGTTGTTGTTGCTCCTAAA
TTTCCTTTAGACAGGAACAATTTGGGGTTAAATATTTTGGGATGGGTGGG
TGGCCTCATCCCTCCATTGGAGGTAATGTCTATCTACTTGAGGTGGTCTC
TTCAGGTTCTATCTCCCTGCTGTTGGGGCTGTTGGGTAATTCAGCTAATG
TCATCTCCATTGGGTCCTGGGAGCCTCTCACATCTCTGGTGTCTGGGACT
TTCTAGTGGTTCCACCCCGCCCACCCCTGTTCCCCACACCTCACTGCTAC
ATATCTCTATTCATTCTCCTGGCCCTGAGGAATTGTCTCATGTCTCTTCC
CATTCTTGATCCTGCCTCCCTTTCACCTCTCCCTCTCCTCTCCCATCCAT
ATCCCTCCCTCCTCCCTCTGCCTACCAAGATTATTTTTGTCCCACCCCCT
TCTAGGTGGGATTGAAGTATCCACACTTTGACCTTCCTTCCTTGTAAACC
TCCTATTATTTGTGATTTGTTCATGGGTATCCTGACCTTTTACTAAATAT
CCCCTTATTCTTGATGACTTTAACTTGTATACCTTTTTGCTTGAAATTCC
CCCTTAACATGGCTTTTTTGTGTTCAATAATTGGGTTTTCTGGACCTTTA
TTTTATATAAATAAAAAAGCCTTCATTTTTTATTTTTTCCTCTTCTATTT
ATTTTTTTTTAATTTTTTTATTTATATATAAATTTTTTTTTTCCTATTTT
CTTCTCTTTCTTCATTTTTATTTAACTCTTTTTTTTTTTTTTTCTTTTTT
TCATAATAATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_b07.b1 MSMg01no141_b07.b1 CHROMAT_FILE:
MSMg01no141_b07.b1 PHD_FILE: MSMg01no141_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:05 2005
         (811 letters)



>mm_chr2_141518974_141520183
          Length = 1210

 Score = 1363 bits (705), Expect = 0.0
 Identities = 774/797 (97%), Gaps = 3/797 (0%)
 Strand = Plus / Minus

                                                                        
Query: 16   gaattccacatggccaagaaagacct-gtaaaatttatgtcctgaatataagtaatcaat 74
            |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 1010 gaattccacatggccaagaaagacttggt-aaatttatgtcctgaatataagtaatcaat 952

                                                                        
Query: 75   tagctacgagttctgggcaattgacaattgagaagaacatgttaaacactagaaggatgt 134
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 951  tagctatgagttctgggcaattgacaattgagaagaacatgttaaacagtagaaggatgt 892

                                                                        
Query: 135  gattcaagatttcaaatatgagatattctaaacaatttggtttattcaacaaataaaaca 194
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 891  cattcaagatttcaaatatgagatattctaaacaatttggtttattcaacaaacaaaaca 832

                                                                        
Query: 195  acaaagaagagagagaagccaagaagagagagaaaagggagataaaagtaagaggctgat 254
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 831  acaaagaagagagagaagccaagaagagagagaaaaaggagataaaagtaagaggctgat 772

                                                                        
Query: 255  aaaacagcaaagaataaagattacttcttatttatcaattaaaagatgcataaggaaatc 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  aaaacagcaaagaataaagattacttcttatttatcaattaaaagatgcataaggaaatc 712

                                                                        
Query: 315  tggcattttggacaatttctacattttgataaggacatcattttaagaatcttaatgttc 374
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 711  tggcattttggacaatttctacattttgataaggacatcattttaagactcttaatgttc 652

                                                                        
Query: 375  tgtgtttacatgcaatctataccttaatccaaatttgggatagaggttgatttaaaacat 434
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 651  tgtgtttacatgcaatctataccttaatccaagtttgggatagaggttgatttaaaacat 592

                                                                        
Query: 435  gataactgtatgcatcatatggaccccatttggattctacgtacccaaatacactgaaaa 494
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 591  gataactgtatgcatcatatggaccctatttggattctacgtacccaaatacacagaaaa 532

                                                                        
Query: 495  caaatgagataacaggaaaaacatgagttatgactagataattcctcctattaatgtttt 554
            |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct: 531  caaatgagataacaggaaaaacatgagttatgtctacataattcctcctactaatgtttt 472

                                                                        
Query: 555  atggatttttttttctcatagagtttctgtcttttagaagcacattcttaacaaccaggt 614
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  atggatttttttt-ctcatagagtttctgtcttttagaagcacattcttaacaaccaggt 413

                                                                        
Query: 615  agatactgagatagcctcaggcctaggtcagcaaggtctggggaagagaggacacctaca 674
            ||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 412  agatactgaaatagcctcagggctaggacagcaaggtctggggaagagaagacacctaca 353

                                                                        
Query: 675  agtgaatctaacagtgaatgtgcagcccatgaagtgctacacagaagaaattctatgcaa 734
            ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352  agtgaatctaatagtgaatgtgcagcccatgaagtgctacacagaagaagttctatgcaa 293

                                                                        
Query: 735  gggaggtccttcaatggcacagacttttaataaaattttaccagcaagtaatggcatgtt 794
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 292  gggaggtccttcaatggcacagacttttaataaaattttaccagcaagtaagggcatgtt 233

                             
Query: 795  ttgcaacaatcaagatg 811
            |||||||||||||||||
Sbjct: 232  ttgcaacaatcaagatg 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 811
Length of database: 1210
Length adjustment: 10
Effective length of query: 801
Effective length of database: 1200
Effective search space:   961200
Effective search space used:   961200
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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