Query= MSMg01no141_d20.b1 MSMg01no141_d20.b1 CHROMAT_FILE:
MSMg01no141_d20.b1 PHD_FILE: MSMg01no141_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:25 2005
(635 letters)
>mm_chr2_29031790_29032823
Length = 1034
Score = 1174 bits (607), Expect = 0.0
Identities = 628/635 (98%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 1 catacaaacacatatagcctcagactaggagatggtttcttatggacttcataaacacta 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacaaatatatatagcctcagactaggagatggtttcttatggacttcataaacacta 260
Query: 61 agaattgtgtttcagaagatgccatcaaaagaatgaaggatgttatgctgacctcaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattgtgtttcagaagatgccatcaaaagaatgaaggatgttatgctgacctcaagca 320
Query: 121 tatctgaatgtactgtcctgtctggaacatacaacaaaccttacaactcgggacattcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctgaatgtactgtcctgtctggaacatacaacaaaccttacaactcgggacattcgg 380
Query: 181 attttggttttcacaacagtgtttttctctctgtagccctggctatcctggaatatactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttggttttcacaacagtgtttttctctctgtagccctggctatcctggaatatactc 440
Query: 241 tgtagaccaggctgacctcagagtctctctgcctctgcctccttgtgctaggatcaaagg 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 tgtagaccaggctgacctcagagtctctctgcctctgcctccaagtgctaggatcaaagg 500
Query: 301 tgtgcgccatcactgcccggcatccaatgaagagttttaaatactgcctatgtgcatgta 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgcgccatcactgcccggaatccaatgaagagttttaaatactgcctatgtgcatgta 560
Query: 361 tttcataatttaaatgttttagtaaactttgtgccttttataaacagacctgcagaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcataatttaaatgttttagtaaactttgtgccttttataaacagacctgcagaagtg 620
Query: 421 gacacagtagatgcctttcagggccggcagaaagactgtatcatcgttacctgtgtcagg 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacacagtagatgccttccagggccggcagaaagactgtatcatcgttacctgtgtcagg 680
Query: 481 gcaagtgctgtgcaaggctcaatagggtaagtagatcacattgcatcgtcacttgttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaagtgctgtgcaaggctcaatagggtaagtagatcacattgcatcgtcacttgttgag 740
Query: 541 aagcagctgtctagatccaccagtgactgctcttagccctagccatcattattttatttc 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 aagcagctgtctagatccaccagtgactgctcttagccctagccatcattattttatt-c 799
Query: 601 cttttgtttaaaatagtggttctcaaccttgagtc 635
|||||||||||||||||||||||||||||||||||
Sbjct: 800 cttttgtttaaaatagtggttctcaaccttgagtc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1034
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1024
Effective search space: 640000
Effective search space used: 640000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_d20.g1 MSMg01no141_d20.g1 CHROMAT_FILE:
MSMg01no141_d20.g1 PHD_FILE: MSMg01no141_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:25 2005
(621 letters)
>mm_chr2_29202113_29203133
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 613/621 (98%)
Strand = Plus / Minus
Query: 1 aattgggcccgggacagtgttgatggggaggctggcccgatgtgatggagcccaagggaa 60
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 821 aattgggcctgggacagtgttgatggggagactggcccgatgtgatggagcccaaggaaa 762
Query: 61 aggtctgataagatcgacgaagtggaagttcctgagaagaggtttcctcatcagatagga 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 761 aggtctgataagatcgacgaggtggaagttcctgagaagaggtttcctcatcagatagga 702
Query: 121 tcactacagcgggaaccgaggaccacagatgacaaccaggacgaaatggccaacagaatg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ccactacagcgggaaccgaggaccacagatgacaaccaggacgaaatggccaacagaatg 642
Query: 181 aatactaggtaacgggacgggagacaaggagtccctgagaggctgactaggaccgggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatactaggtaacgggacgggagacaaggagtccctgagaggctgactaggaccgggaga 582
Query: 241 tgagcgaaagtgacagcggactgtgaataaaggagagaggcccttgactgggcaggttgg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 581 tgagcgaaagtgacagcggactgtgaataaaggagagaggcccgtgactgggcagactgg 522
Query: 301 cgcgggatccgggcgggacaggtgccagaagggtcctcaaccccgatcctttcagccagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cgcgggatccgggcgggacaggtgccagaagggtcctcaaccccgatcctttcagccagt 462
Query: 361 acctacttgaggtcccggttgacggaatgcaagttgtcctggaagttcgcgatgaaggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acctacttgaggtcccggttgacggaatgcaagttgtcctggaagttcgcgatgaaggcc 402
Query: 421 ttctcgcggccctccagcgtctctttgttgcgcatgccatccttaaggcagtcgaagacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttctcgcggccctccagcgtctctttgttgcgcatgccatccttaaggcagtcgaagacc 342
Query: 481 ctactcacgctagagcgtagcgcctggatggcgctaatagcctgcgaaaaggcctccagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctactcacgctagagcgtagcgcctggatggcgctaatagcctgcgaaaaggcctccagg 282
Query: 541 ttcacaccaacgctcagcacgtccgccatgttgcagctgtcacagccggctttccagagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttcacaccaacgctcagcacgtccgccatgttgcagctgtcacagccggctttccagagt 222
Query: 601 ccacagcctgagcggcgcgcg 621
|||||||||||||||||||||
Sbjct: 221 ccacagcctgagcggcgcgcg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
