BAC Information

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BAC

Clone NameMSMg01-141E11
Chromosome2 (Build37)
Map Location 95,305,390 - 95,306,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141E11.T7 (MSMg01no141_e11.b1)MSMg01-141E11.TJ (MSMg01no141_e11.g1)
ACCAG346193AG346194
length1,0821,240
length of high quality
(start - end)		745 (90 - 834)710 (90 - 799)
definitionCHROMAT_FILE: MSMg01no141_e11.b1 PHD_FILE: MSMg01no141_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:30 2005CHROMAT_FILE: MSMg01no141_e11.g1 PHD_FILE: MSMg01no141_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATACCTNNNNNTGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAGCTGAGGAATACTGCCTGTAAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTACCCATCAGAGAAATGCAAATCAAAACAACC
CTGAGATTCCATCTCACTCCAATCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGCGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCATTACCTCT
CCTGGGCATATGTCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCCAGAAGCTGGAAAGAATCCAGATGGCCCTCAACA
GAGTAATGTATACAAAAAATGTGGTACATTTATACATTGGATTACTACTT
AGCTATTAAAAAGAATGAATTTATGAAATTCCTATGCAAATGGTTGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAAAT
GATATTTACTCACTGATAAGTGGATAGTATCCCAGAAACTTAGTATAGGA
GATATAAGGTACAACTTGCAATGAAGACCAAAGTGTGGACACTTTGCCCC
TTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGGGACAAAGT
TTGGAGCTGAGACAAAGGGATGTTATCTAGAGACTGCCATATCCAGGGAT
CCATCCCATAATTAGCCTCCAAACGATGACACCATTGCATACAATAGCAA
GCATTTGCTGGCAGGACCCTGAAATAGCTGTCTCTTGTGAAACTAGGCCG
TGGCCTAGCAAACACAGAAATGGATGCTCCCAGTCCGGTTATGGAAGGAT
CCCAGGGGCCCCCCCAGGGAGGAATCTAAGAAAGGATTCCCAGGAGCCCC
AAAAAAATCTTGCAACCCTGTGTGTGTTTCCCACCCTTTTTTTAACTTAT
TCCGGCACCCCTTGGGAATCCTTTGTATTTCT

NCCTCCCTTTTTTTAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGAGCATGTGGAGACAG
AATAACTGTGGAGATCTAGCCCTCTCTCCCTCCTACCTTCCTTCACTCCC
TCCCTTCCTACCTGCCTCCCTCCCATCCCCTCCTATTTAATCCCCATCTA
TTTAGTAGAGGAAAGCAGGAAAAAACTATCTATCATTTCTCCAGCTCTGA
TAAATATCATAAAAATGTATCTGTCTGGATAGCTAACCATATATTTCCTT
CAGCACATCTATTCTCTAACCGCCAATTTCTTCTTTTTCTTTTCAACATT
TCAATTTCCCATGTGTTAAACTGGAATATAGAACTCAAAGGCTCAATCCT
AGAAAGTTTATGATTACCTTCTTATAAAACTGCATGCAGGTTATAATGCT
TTCATGGTTTGAAAAGCCCTACTTGTAGGAAACTGAAATAATAACTCCTT
CTCTTAAAGCCTTTATGTATCCCCCCCCAACATATAATATGACCAGAGAG
AACAGACTTAGCCACAATCAAAACTTTAAAAGAGAACCCTTTTTAATTAT
TATTTTCATTTTTATCATTAGTTCTGTGTTGCTTGTATAATGATGTCATT
GAACTCAAATGGGAGGACAACTCTCAAGAATAGGTTCTCCTCTCCCATTG
TAGGTTCACAATGAGCATTTTTACAAACAGATCCATATCTCCAGCCCCAA
TCTACAACTTTTAAACTAAACCTATTTTAAAATTCCAATATGATATTAAG
AAGATGGCTCAGTGGTTAAGAGCACCTTCTATCCTTCCATAGGACTAAGT
TCTGGCCCTAGAATCCCGGTCAGAGAAGGCTATTGCTATGACCACAGCTG
ATGGTGATCTGAAAGGCTCTTCTGCTTTATGTAAACATTGTGTTCTACCT
ATAATTCCCGGCACTCAAAAAATGACTATTTTAAGTCCATTTTATTTAGG
GAAATCTGGGTTCCCACTGGAGGGTTTCATCTCTTATTGGAATAAATATG
GGAAAAAACCTGTAGGAAATATTTCCTGGTGTAAATACTCTGGGTCTCCA
ATCCATGGGTGTCCCACCCCTCTTTAGGTTTATTTTCCCCCCTATTATAN
CTTTATTTGTGACGAAACTTGTTTCTATAATAATTCTTCCACATCTACTT
ACACTTTGGTTCGCCCTCTGTTTCGATTTTATATTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_e11.g1 MSMg01no141_e11.g1 CHROMAT_FILE:
MSMg01no141_e11.g1 PHD_FILE: MSMg01no141_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:30 2005
         (710 letters)



>mm_chr2_95305105_95306215
          Length = 1111

 Score = 1352 bits (699), Expect = 0.0
 Identities = 708/711 (99%), Gaps = 1/711 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggagacagaataactgtggagatctagccctctctccctcctaccttccttcactcc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 996 tgtggagacagaataactgtggagatctagctctctctccctcctaccttccttcactcc 937

                                                                       
Query: 61  ctcccttcctacctgcctccctcccatcccctcctatttaatccccatctatttagtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 ctcccttcctacctgcctccctcccatcccctcctatttaatccccatctatttagtaga 877

                                                                       
Query: 121 ggaaagcaggaaaaaactatctatcatttctccagctctgataaatatcataaaaatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ggaaagcaggaaaaaactatctatcatttctccagctctgataaatatcataaaaatgta 817

                                                                       
Query: 181 tctgtctggatagctaaccatatatttccttcagcacatctattctctaaccgccaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tctgtctggatagctaaccatatatttccttcagcacatctattctctaaccgccaattt 757

                                                                       
Query: 241 cttctttttcttttcaacatttcaatttcccatgtgttaaactggaatatagaactcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cttctttttcttttcaacatttcaatttcccatgtgttaaactggaatatagaactcaaa 697

                                                                       
Query: 301 ggctcaatcctagaaagtttatgattaccttcttataaaactgcatgcaggttataatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ggctcaatcctagaaagtttatgattaccttcttataaaactgcatgcaggttataatgc 637

                                                                       
Query: 361 tttcatggtttgaaaagccctacttgtaggaaactgaaataataactccttctcttaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tttcatggtttgaaaagccctacttgtaggaaactgaaataataactccttctcttaaag 577

                                                                       
Query: 421 cctttatgtatcccccccc-aacatataatatgaccagagagaacagacttagccacaat 479
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cctttacgtatcccccccccaacatataatatgaccagagagaacagacttagccacaat 517

                                                                       
Query: 480 caaaactttaaaagagaaccctttttaattattattttcatttttatcattagttctgtg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caaaactttaaaagagaaccctttttaattattattttcatttttatcattagttctgtg 457

                                                                       
Query: 540 ttgcttgtataatgatgtcattgaactcaaatgggaggacaactctcaagaataggttct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttgcttgtataatgatgtcattgaactcaaatgggaggacaactctcaagaataggttct 397

                                                                       
Query: 600 cctctcccattgtaggttcacaatgagcatttttacaaacagatccatatctccagcccc 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cctctcccattgtaggttcacaatgagcatttttacaaacagatccatatctccagcccc 337

                                                              
Query: 660 aatctacaacttttaaactaaacctattttaaaattccaatatgatattaa 710
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aatctacaacttttaaactaaacctattttaaaattccaatatgatattaa 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1111
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1101
Effective search space:   770700
Effective search space used:   770700
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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