Query= MSMg01no141_g05.b1 MSMg01no141_g05.b1 CHROMAT_FILE:
MSMg01no141_g05.b1 PHD_FILE: MSMg01no141_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:43 2005
(698 letters)
>mm_chr2_18585164_18586261
Length = 1098
Score = 1272 bits (658), Expect = 0.0
Identities = 688/698 (98%), Gaps = 1/698 (0%)
Strand = Plus / Plus
Query: 1 tcgctaaggagacaggtgtaagaagacaaggcgatgagaccagccacatacctgaacccg 60
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 202 tcgctaaggagacaggtgtaagaagacaaggagatgagaccagccacatagctgaacccg 261
Query: 61 ggtgagaataaaaaagataataagagcaagtcagagaacaagccgaagtttatggcctaa 120
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 262 ggtgagaat-aaaaagataataagagcaagtcggagaacaagccgaagtttatggcctaa 320
Query: 121 gcatttattaatatataattagtctcggagctgttattcctggaaattaagtggagagaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gcatttattaatatataattagtctcggagctgctattcctggaaattaagtggagagaa 380
Query: 181 agaaaagcaaagagttacaccattctcacccactgtggctttttctacaaaccactgtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaagcaaagagttacaccattctcacccactgtggctttttctacaaaccactgtag 440
Query: 241 gaatcatattgatactggatgtttaagcctgatcaagattgaatactattttctaaaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatcatattgatactggatgtttaagcctgatcaagattgaatactattttctaaaatt 500
Query: 301 ctaataaagggaactaagagattaggcttaagtgaatacaattaacttctctttaaacta 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaataaagggaactaagagaaaaggcttaagtgaatacaattaacttctctttaaacta 560
Query: 361 tttatgtcaatgcacagacacttgtagctgaggtaaatatttgaatctgttacttatgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttatgtcaatgcacagacacttgtagctgaggtaaatatttgaatctgttacttatgac 620
Query: 421 acatgccccgccaccccctcctttcgtggcaggatgtttgctttcgaaatgactactttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatgccccgccaccccctcctttcgtggcaggatgtttgctttcgaaatgactactttc 680
Query: 481 ctatagttgctcttgcttttaatttaacagaccattattatgactcaacttaaacattaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 ctatagttgctcttgcttttaatttaacagaccattattatgactcaacttaaacattga 740
Query: 541 atgccaccatctctataaacagacaaatattgatcatagcaacttagaaataaagaataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgccaccatctctataaacagacaaatattgatcatagcaacttagaaataaagaataa 800
Query: 601 aaatatgaaatgaaaataatttaacagtatcagtttgaagattctctttaatcattgatt 660
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 aaaaatgaaatgaaaataatttaacagtatcagtttgaagattctccttaatcattgatt 860
Query: 661 aaaatgtctcacaaaaaattatgtcatatattttattt 698
||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaaatgtctcacaaaaaattatgtcatatattttattt 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_g05.g1 MSMg01no141_g05.g1 CHROMAT_FILE:
MSMg01no141_g05.g1 PHD_FILE: MSMg01no141_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:44 2005
(672 letters)
>mm_chr2_18683199_18684274
Length = 1076
Score = 1218 bits (630), Expect = 0.0
Identities = 660/672 (98%), Gaps = 4/672 (0%)
Strand = Plus / Minus
Query: 1 taaatgaagcatcactaatggggcgggcatcgtttatcaacaagcagtaccaggaatact 60
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 872 taaatgaagcatcactaatggggcgggcatggattatcaacaagcagtactaggaatact 813
Query: 61 ggccagtcactggagggactctgaatgcatcttcatccatactgaactccatctcaggtt 120
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 812 ggccagtcactggagggactctgaatgcatcttcatccatactgaaatccgtctcaggtt 753
Query: 121 aaagagggaggtataaaacagaagctgtcatggaagagaaatacaccacaaaattatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaagagggaggtataaaacagaagctgtcatggaagagaaatacaccacaaaattatgga 693
Query: 181 agaaatagatgtgtacatagaattgtttagatcagatcagctatgccaaaagtcataaat 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agaaatagatgtatacatagaattgtttagatcagatcagctatgccaaaagtcataaat 633
Query: 241 aataagttgtaacatgagtatttgtgaggaatatcaagtacgagaggtagcatttccatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aataagttgtaacatgagtatttgtgaggaatatcaagtacgagaggtagcatttccatc 573
Query: 301 ttagagccttctggaaatctttatgatcaatacatcaatgtatctatatatcagtatatg 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 572 ttagagccttctggaaatctttatgaacaatacatcaatgtatctatatatcagtatatg 513
Query: 361 aaggtcacttagaagagcgtttatctggaaggttcgctcatccca----ttttttttttg 416
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 512 aaggtcacttagaagagcgtttatctggaaggttcgctcatcccattttttttttttttg 453
Query: 417 aatgctcagatttttgttgtctgtagattttatttgtatattttgttgtttgtatacttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aatgctcagatttttgttgtctgtagattttatttgtatattttgttgtttgtatacttt 393
Query: 477 gctttttctcaactcattctcttctacagggtagcatttaggttgtaagtgcttctttct 536
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 392 gctttttctcaactcattctcttctacagggtagcgtttaggttgtaagtgcttctttct 333
Query: 537 ccagtttctttttcaaaaatgtccctgggacttcgtgcttcccttcactctcttccagag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccagtttctttttcaaaaatgtccctgggacttcgtgcttcccttcactctcttccagag 273
Query: 597 aggtaagtttttacagttatcctgagatctataaaacgacaataatgtaaacgatatgga 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aggtaagtttttacagttatcctgagatctataaaacgacaataatgtaaacgatatgga 213
Query: 657 gactattgcatg 668
||||||||||||
Sbjct: 212 gactattgcatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1076
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1066
Effective search space: 705692
Effective search space used: 705692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
