Query= MSMg01no141_h06.b1 MSMg01no141_h06.b1 CHROMAT_FILE:
MSMg01no141_h06.b1 PHD_FILE: MSMg01no141_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:52 2005
(270 letters)
>mm_chr2_60395419_60396088
Length = 670
Score = 493 bits (255), Expect = e-144
Identities = 264/267 (98%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 1 aaatttttattctgatttctctcaccctttcttgctgagattttaattccttcagtgctt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 aaatttttattctgatttctctcaccctttcttgctgagattttaattcctttagtgctt 325
Query: 61 aaaacaattcattatttttgcccctaaccacagcccatgcaaacccatttttagttacac 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 aaaacaattcattatttttgcccctaaccacagcccatgcaaacccatatttagttacac 265
Query: 121 aattcaggttccaaatggttttctcagttttcaagtgacttcaaatactatatgcctttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aattcaggttccaaatggttttctcagttttcaagtgacttcaaatactatatgcctttt 205
Query: 181 aagcccatcctttct-cccttattgtcttcctttcctcctctccccaaacccacactttc 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aagcccatcctttcttcccttattgtcttcctttcctcctctccccaaacccacactttc 145
Query: 240 cccttctttttctttctttcctccttc 266
|||||||||||||||||||||||||||
Sbjct: 144 cccttctttttctttctttcctccttc 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_h06.g1 MSMg01no141_h06.g1 CHROMAT_FILE:
MSMg01no141_h06.g1 PHD_FILE: MSMg01no141_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:52 2005
(675 letters)
>mm_chr2_60266767_60267841
Length = 1075
Score = 890 bits (460), Expect = 0.0
Identities = 525/564 (93%), Gaps = 28/564 (4%)
Strand = Plus / Plus
Query: 1 tggaagtgtgtgtgatgctagggcaccgttacagtgtggttgaatgacagtggcctctgg 60
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct: 175 tggaagtgtgtgtgatgctagggcactgggacagtgtggttgaatgacagtggcctccgg 234
Query: 61 aggcttatacatttgaatgcttggtctttggttggtggaactatttgaggactaggaggt 120
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 235 aggcttatacacttgaatgcttggtctctggttggtggaactatttgaggactaggaggt 294
Query: 121 gtggctcgttggaggaggtatattattaggagctatggggtttacaaagccatactcttt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 295 gtggctcgttggaggaggtatattattaggagctttggggtttacaaagccatactcttt 354
Query: 181 ccagttagtactctctctctccctccccccctcccgcctctgtctcccttatgtatgtgt 240
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 355 ccagttagtactctctctctccct-cccacctcccgcctctgtctcccttatgtatgtgt 413
Query: 241 gtgtgtatgtctatgattacgttctctttaatatatatgcatctgtcttttatgtcctgc 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gtgtgtgtgtctatgattacgttctctttaatatatatgcatctgtcttttatgtcctgc 473
Query: 301 attatgttatagctatataacaggcagaattcagaaaaactaaaccaggaaaacaaggta 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 attatgttatagctatagaacaggcagaattcagaaaaactaaaccaggaaaacaaggta 533
Query: 361 aaccttttctgccctaaccgatctacagtgaattgcgtccctctaggctgaaaactaa-- 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaccttttctgccctaaccgatctacagtgaattgcgtccctctaggctgaaaactaaaa 593
Query: 419 -------------------------ggggcatgccgagatgaaaatggctgaaggcctgg 453
||||||||| |||||||||||||||||||||||||
Sbjct: 594 ccagtaagtggtttgggtttactaaggggcatgctgagatgaaaatggctgaaggcctgg 653
Query: 454 acttagcccattcctgactctacctggctaagagacccggagaaaacccatccatctgca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acttagcccattcctgactctacctggctaagagacccggagaaaacccatccatctgca 713
Query: 514 gctcacatttcaggtctgtatgga 537
||||||||||||||||||||||||
Sbjct: 714 gctcacatttcaggtctgtatgga 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
