Query= MSMg01no141_h21.b1 MSMg01no141_h21.b1 CHROMAT_FILE:
MSMg01no141_h21.b1 PHD_FILE: MSMg01no141_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:57 2005
(561 letters)
>mm_chr2_75601186_75602146
Length = 961
Score = 973 bits (503), Expect = 0.0
Identities = 549/569 (96%), Gaps = 8/569 (1%)
Strand = Plus / Plus
Query: 1 gtttcccctgcctgtgagggtgctgaggagcttgctatgtgaaacgggattttcccagtc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gtttcccctgtctgtgagggtgctgaggagcttgctatgtgaaacgggattttcccagtc 252
Query: 61 taccaacaccattggggataagtggcggtgatgtcagcagtgactgtggagagcttcttg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 253 taccaacaccattggggataagtggtggtgatgtcagcagtgactgtggagagcttcttg 312
Query: 121 acctcttga--------atgtggtctgaacaggaagcgtgagcgcagccttctgacttct 172
||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 313 acctcttgaatgtaaccatgtggtctgaacaggaagcatgaccgcagccttctgacttct 372
Query: 173 gctctcccagcccttcctgaggtttcctgagcacatgattgctggtattcactggcagct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gctctcccagcccttcctgaggtttcctgagcacatgattgctggtattcactggcagct 432
Query: 233 gtggtgtgtgtgcagcccacaagctgataggcagctagctagtaggcatgtttcttggtg 292
||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 433 gtggtgtgtgtgcagcccacaagctgataggcagctagctagtaggcgtggtgcttggtg 492
Query: 293 taaactaagactctcttggaaagggaacgatcacctgcagttctaccaggtagagccatt 352
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 tgaactaagactctcttggaaagggaatgatcacctgcagttctaccaggtagagccatt 552
Query: 353 gcttttctggagaaaattaggctttagagctagcctaaatctacctgatgtaccgtacag 412
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcttttctagagaaaattaggctttagagctagcctaaatctacctgatgtaccgtacag 612
Query: 413 ccacctacatgacaaggtctgctggtttctgctgccactcaacagcaattctgagaccat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccacctacatgacaaggtctgctggtttctgctgccactcaacagcaattctgagaccat 672
Query: 473 catttttgttctctacagtggtaactggatgagtctttttgcttgagtctacatgtcctg 532
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 673 catttttgttctctacagaggtaactggatgagtctttttgctttagtctacatgtcctg 732
Query: 533 catgtctttccacttgtgggcatttgaat 561
|||||||||||||||||||||||||||||
Sbjct: 733 catgtctttccacttgtgggcatttgaat 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_h21.g1 MSMg01no141_h21.g1 CHROMAT_FILE:
MSMg01no141_h21.g1 PHD_FILE: MSMg01no141_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:57 2005
(668 letters)
>mm_chr2_75790638_75791704
Length = 1067
Score = 965 bits (499), Expect = 0.0
Identities = 534/549 (97%), Gaps = 7/549 (1%)
Strand = Plus / Minus
Query: 1 ccagcatggaggaagatggcttgatattcctgagatacaacctac---tccccttgccct 57
|||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 545 ccagcatggaggaagatggcttgatattgaggagatacaacctacttgt----ttgccct 490
Query: 58 aaaccagcactgggacctgcacagatcatggggtgtccttcatggggcagtaggagtcac 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaaccagcactgggacctgcacagatcatggggtgtccttcatggggcagtaggagtcac 430
Query: 118 gttacatctactcctgcagcccagggtgagccaaagcaccctgtgtgcaccggggctttc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttacatctactcctgcagcccagggtgagccaaagcaccctgtgtgcaccggggctttc 370
Query: 178 ctgccaccttcttgggcctcagctagggtcccttagctacaagcagtcagaagcaagtac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctgccaccttcttgggcctcagctagggtcccttagctacaagcagtcagaagcaagtac 310
Query: 238 ataaagggaaaaatatgcactgaaaggatccagggtagctttttttaaaaaatcaaaaga 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 309 ataaagggaaaaatatgcactgaaaggatccagggtagcttttttaaaaaaatcaaaaga 250
Query: 298 aaggcttaacactttagcctgaggattatttgaaagagaagaggttgtgctcagtcctta 357
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 249 aaggcttaacactttagcctgaggacaagttgaaagagaagaggttgtgctcagtcctta 190
Query: 358 gcataacctaagccatgttagagacagcagggcgtcattctgacctaagcaccgacgata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcataacctaagccatgttagagacagcagggcgtcattctgacctaagcaccgacgata 130
Query: 418 tagaccctaacttacctaccaaaatgaaaacaaagacctgctccgtcatagtccgtagtt 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tagaccctaacatacctaccaaaatgaaaacaaagacctgctccgtcatagtccgtagtt 70
Query: 478 ctgaaagcatccctaaatgcacgactctttgtatgctctgtagcctcacttactgctctt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ctgaaagcatccctaaatgcacgactctttgtatgctctgtagcctcacttactgctctt 10
Query: 538 attgccaat 546
|||||||||
Sbjct: 9 attgccaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
