Query= MSMg01no141_k06.b1 MSMg01no141_k06.b1 CHROMAT_FILE:
MSMg01no141_k06.b1 PHD_FILE: MSMg01no141_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:16 2005
(311 letters)
>mm_chr2_77020733_77021443
Length = 711
Score = 540 bits (279), Expect = e-158
Identities = 304/313 (97%), Gaps = 4/313 (1%)
Strand = Plus / Minus
Query: 1 aatgaagctttaatgct-gc-cttactccctgctgtgggaccacgatggaacagtaagat 58
||||||||||||| ||| || | |||||||||||||||| | ||||||||||||||||
Sbjct: 511 aatgaagctttaacgctggcac--actccctgctgtgggaagatgatggaacagtaagat 454
Query: 59 aggagacaagacacaaatagcatctgtgttgggtttgacagggcatgaggcgactccatt 118
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 453 aggagacaagacacaaatagcatctgtgttgggtttgacagggcatgagtcgactccatt 394
Query: 119 tactccactagttagcaagccaaagaaaggcatggttggagtgtagcaagaaaggaacaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tactccactagttagcaagccaaagaaaggcatggttggagtgtagcaagaaaggaacaa 334
Query: 179 gctatagaacaagagcatacatctgaggatatttgtaggatctcccaataccgaggtaga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gctatagaacaagagcatacatctgaggatatttgtaggatctcccaataccgaggtaga 274
Query: 239 catgacttgagacaaccattagtgctggctttggttagaaaagaggcagtctgacaaact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 catgacttgagacaaccattagtgctggctttggttagaaaagaggcagtctgacaaact 214
Query: 299 caggcagtgatgg 311
|||||||||||||
Sbjct: 213 caggcagtgatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_k06.g1 MSMg01no141_k06.g1 CHROMAT_FILE:
MSMg01no141_k06.g1 PHD_FILE: MSMg01no141_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:16 2005
(601 letters)
>mm_chr2_76887246_76888246
Length = 1001
Score = 1042 bits (539), Expect = 0.0
Identities = 586/607 (96%), Gaps = 12/607 (1%)
Strand = Plus / Plus
Query: 1 gctttcttgtgacaccca--ggctctgcgacagtaaaagttagagttgctggcttcagaa 58
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 gctttcttgtgacac--atgggctctgcgacagtaaaacttagagttgctggcttcagaa 258
Query: 59 ctagtccatagtgactgaagttgaggaggcctccctcgggcagcatggctgacaaacgga 118
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct: 259 ctagtccatagtgactgaagttgaggaggcctccctcgggcagcatggctaactaacaga 318
Query: 119 caagctgaatgtaattctgactttgaggaataatatctacaaaaggtgctgacttcttaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 319 caagctgaatgtaattctgactttgaggaataatatctacaaaaggtgctggcttcttaa 378
Query: 179 tgttattctcaccatgtttattaagttcagaaactcgaggctcaagtcctgggtcaaaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgttattctcaccatgtttattaagttcagaaactcgaggctcaagtcctgggtcaaaaa 438
Query: 239 actcttctttaaaaacagctgccatttcctctcagcggagttagaccgttt----cttga 294
|||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 439 actcttctttaaaaacagctgccatttcctctcagcggagttagac----tggcacttga 494
Query: 295 ccacagcatcgtcttcatctttccaaggaatttcagtcagataaaattcctttaggctct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccacagcatcgtcttcatctttccaaggaatttcagtcagataaaattcctttaggctct 554
Query: 355 gaagctgctcctctgcctaaaacaggaggaggcaaatgagagttaagaaatattttagat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaagctgctcctctgcctaaaacaggaggaggcaaatgagagttaagaaatattttagat 614
Query: 415 aaaaaggacacagagtccatttggagccagtataaaattaaactgaaactccagttttca 474
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 aaaaaggacacagagtccatttggagccagtataaaattaaactgaaactctagttttca 674
Query: 475 gcattctttaaaaaattattgactatttccagggttctgaataccacaagaatctgctta 534
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 gcattctttaaataattattgactattttcagggttctgaataccacaagaatctgctta 734
Query: 535 gatagctgacagacaaaaggaagtggtaaggttgttgccaatcagaaatatttattgcac 594
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gatagctgacggacaaaaggaagtggtaaggttgttgccaatcagaaatatttattgcac 794
Query: 595 cctagat 601
|||||||
Sbjct: 795 cctagat 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
