BAC Information

Click to search

BAC

Clone NameMSMg01-141L11
Chromosome2 (Build37)
Map Location 137,793,376 - 137,794,027
singlet/doubletsinglet
Overlap genenone
Upstream gene2210009G21Rik, Jag1
Downstream geneBtbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141L11.T7 (MSMg01no141_l11.b1)MSMg01-141L11.TJ (MSMg01no141_l11.g1)
ACCAG346519AG346520
length1,2661,247
length of high quality
(start - end)		640 (85 - 724)744 (77 - 820)
definitionCHROMAT_FILE: MSMg01no141_l11.b1 PHD_FILE: MSMg01no141_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:26 2005CHROMAT_FILE: MSMg01no141_l11.g1 PHD_FILE: MSMg01no141_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTCTTNNNNNNACATTGGGCCTATAGACTCCTATGGGAGAGGATCC
GCGGAATTCGCAAAAGCCTTGTCCCCGTTATATATGACACTAGCTCCCAG
GGTGCTGTAAGCCTACCTCGAAATATGCTGGATTCCAGTGCTCAGTCACA
GCCTCAGCTGAGAGTTGTTCTTTACTATAATGGAGCCTAAATATAAAAAA
GTCTCTTGGTCCCTCCCAGTTAAAGCAAGGGTAAATTGGAAAAGTCTAAC
TTATTCACAGTGTTACAAGAACCGTGGGACTGCACCAAATTAAAATAGAA
ATATATCTAAAGCTGCTATACTCCTGTATAATAAACTATTCCAAACTCAG
TGGTTATAATGTAGATATTTCTGTTTCTCATGATTTTGAGGTTGCTGGGT
TTGCTGGATCTATGCTAGACTCGTTTTTTTGGTGTTTGTTTGTTTGTTTT
GTTTCTTTGTTTTTTTTGTAATAAGGCTGTAGGTCAGTTCAGATGTGGCC
TACAGTTCTCATTTTTCTTAAGACAGCAACTTCTGGAAGTCTCTCCTGAT
GATGAAGAGGAGGAATACAGAAAGTTAAGCTCTGCCACAGGGGTATATTT
AAAACTACTTTTACAAAATATATGCACTAACATGGTTGGCTAAATGCCTT
CTGTTGGCATCAATGTTTTGAGGCATACATGACTCATTGTATTTTATTGA
GAGGAAATGTAGAGCCATAAAGAATGTATTTCTAGGAAGGATAGGATGGT
AGAGTAATATTTCTAGTTGAAAACTAAATAAATGTATTGTCTAGTTGCAA
GCCGATATTTTGATTCATCACTAATTGCATAAATGATGACCATGTTGTAT
GTAATATTCAACAATTAGATCATGTGAAAGAAAGTTATAATTAATTATAG
GCCTTATGGAAGCTTAATGAACTATACCTAATGCATTTATATTTTTATTA
CTTCCTTTTCACTGAAATTAAAAAAAATTGCATTTGAAAATTAAACTGGA
AACCAAAATGTATCCCTTTTTATTATTGGAAACAATTTGCTCCCAAATTT
CCTTTTTCCCGGTTTTAAAAAATTTTCTTTTTAAGTGAAATAAAAATATT
TCTTCTTGTTATTTGTCGCGACCTTTCACTCAATACTTACGGACTATCTC
TTTTTAAACTATACAAATATCTCTCTTTTCTTATATATATAAACTCTCCT
CTGTGTTCTACAATATACAACGTGACTTATTTNCTATCTCGCCTTCTGTC
CGTTGTGTATATCTCC

CTTTCTTTTNNNNTAAGAAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTTTTAAATTTTCTTTGGTA
GAATTCTCCAGTGGAGACCTCTGTTCTGGAGTTTTCCCTTGCTGAGATGT
CTTTTAGTCAGTTATTCAATAGATTTACTAGTTGTAGGCTTGTTTAGTTT
CTTAAAGATCCATAATTCAGTACTGGTGTGTTTTATACTTCTGTGAATTT
ATTTGCATGGCTCTTATTGTTCAAATCATTTATATCTTTAGGTGGATTTA
TTTCTAAATAATCTATTCTCTTTGATGCTATTGTTAATGTTATTTTATTC
TCCTAGATTATCCCACTTGTACTTAATTCCTGGCAATCTCTTCTTCTGCC
TCCTGTGGTTTTGTTGCATCCATTGTAATATCTCCTCTCGTTTCTGGTTT
TTGTTAAATGATTATTTTCCATTTTTCTTAGTCTTATTATAAACTTCTCA
ATTTTGCTAATCATTTCATAAAGCTAAATTATAGATTGAATAGACTTTTA
AATTATTTTTTTTTCTTTATTTATTTCTGCTGCTTTATTGTCTTCTGTCT
GCTCTCTACTTTAGGCTTCATTTTTTTTTCTGCTTTTTTTCTAGCTCTTT
GTTGGCTGAAGAGCTTTCTAGAATGAATGTATTTCTTGATATAACATGTC
TAAGTACTGCTTTTGTTACACAACAAAAGCTTGGTATGTTACATTTTCAT
TTATTCTCAATTTAATTCTAATTTCTGCTGTTTTCTTTTCCAGCCTAGTA
CTTAACTTCCAAGTATCTGTGAACTATTTAGCATTCTTTTATTCTATTGA
TTTGTCCTTTAGTTCTGCTTTTGTCAGGAACCATATATACTACGAATTTC
AGTCACCTTGGATTTGTAAAGCCTTTTCTAGTATTCTCAGGCTGTATCTG
TGTTGAAAATTTTCTATTCTGGTGTTAGACAGAGTGTTCTGGGGCATGAA
TTGAAAGTTTCATCTGGTCCTGGAATCTATTTCTTGAAGTTCTTTATTTG
ATCTGTTTTTTTGAAAGGTTTTCCCTCTCTTTGGAAATTNTGGGATAGGG
ACCTTCTTTATTTACACCCAATTGTTTGGATGGGTGTTTTTTCCCCCCAA
ACCTGGGAGAAGAGGATTTTTTTTTTTTGTAGTGTGTTATATAGTGGGGG
TCGAAACACTCCCCCTGGATGGTGTTTTTTTTCTCATGTAAATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_l11.b1 MSMg01no141_l11.b1 CHROMAT_FILE:
MSMg01no141_l11.b1 PHD_FILE: MSMg01no141_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:26 2005
         (640 letters)



>mm_chr2_137793188_137794227
          Length = 1040

 Score = 1033 bits (534), Expect = 0.0
 Identities = 618/652 (94%), Gaps = 12/652 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacactagctcccagggtgctgtaagcctacctcgaaatatgctggattccagtgctca 60
           ||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||
Sbjct: 189 tgacactagctcccagggtgctgtaagcctatcttgaaatatgctggatttaagtgctca 248

                                                                       
Query: 61  gtcacagcctcagctgagagttgttctttactataatggagcctaaatataaaaaagtct 120
           ||||| |||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 249 gtcactgcctcagctgagagttgttctttactacggtggagcctaaatataaaaaagtct 308

                                                                       
Query: 121 cttggtccctcccagttaaagcaagggtaaattggaaaagtctaacttattcacagtgtt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttggtccctcccagttaaagcaagggtaaattggaaaagtctaacttattcacagtgtt 368

                                                                       
Query: 181 acaagaaccgtgggactgcaccaaattaaaatagaaatatatctaaagctgctatactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acaagaaccgtgggactgcaccaaattaaaatagaaatatatctaaagctgctatactcc 428

                                                                       
Query: 241 tgtataataaactattccaaactcagtggttataatgtagatatttctgtttctcatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtataataaactattccaaactcagtggttataatgtagatatttctgtttctcatgat 488

                                                                       
Query: 301 tttgaggttgctgggtttgctggatctatgctagactcgtttttttggtgttt------- 353
           ||||||| |||||||||||||||||||||||||||||| |||||||  |||||       
Sbjct: 489 tttgaggctgctgggtttgctggatctatgctagactcattttttttttgtttttttttt 548

                                                                       
Query: 354 ---gtttgtttgttttgtttcttt-gtttttttt-gtaataaggctgtaggtcagttcag 408
              |||| |||||||| ||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct: 549 tttgtttttttgtttttttttttttgtttttttttgtaataaggctgtaggtcagttcag 608

                                                                       
Query: 409 atgtggcctacagttctcatttttcttaagacagcaacttctggaagtctctcctgatga 468
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgtggcctacaattctcatttttcttaagacagcaacttctggaagtctctcctgatga 668

                                                                       
Query: 469 tgaagaggaggaatacagaaagttaagctctgccacaggggtatatttaaaactactttt 528
           |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 669 tgaagaggaggaatacagaaagttaagctctgccacgggggtatatttaaagctactttt 728

                                                                       
Query: 529 acaaaatatatgcactaacatggttggctaaatgccttctgttggcatcaatgttttgag 588
           |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 729 acaaaatatatgcactaaaatgattggctaaatgccttctgttgacatcaatgttttgag 788

                                                               
Query: 589 gcatacatgactcattgtattttattgagaggaaatgtagagccataaagaa 640
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gcatacatgactcattgtattttattgagaggaaatgtagagccataaagaa 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |