Query= MSMg01no141_n08.b1 MSMg01no141_n08.b1 CHROMAT_FILE:
MSMg01no141_n08.b1 PHD_FILE: MSMg01no141_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:42 2005
(191 letters)
>mm_chr2_3646571_3647160
Length = 590
Score = 346 bits (179), Expect = e-100
Identities = 185/187 (98%), Gaps = 1/187 (0%)
Strand = Plus / Plus
Query: 1 ttagggttcaaaagcgatagatttaggagtgacacaagagacgatctgtggtgtaactaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttagggttcaaaag-gatagatttaggagtgacacaagagacgatctgtggtgtaaccaa 259
Query: 61 agcgatcagtggtttacactccaagggaaggtggcaaggttggttctgagatacaaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcgatcagtggtttacactccaagggaaggtggcaaggttggttctgagatacaaggag 319
Query: 121 gtgttctgcagagaagggaggtcttcaggggtccaggatggatgtggaggtgaagggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgttctgcagagaagggaggtcttcaggggtccaggatggatgtggaggtgaagggttg 379
Query: 181 ggagtgg 187
|||||||
Sbjct: 380 ggagtgg 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 590
Length adjustment: 8
Effective length of query: 183
Effective length of database: 582
Effective search space: 106506
Effective search space used: 106506
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_n08.g1 MSMg01no141_n08.g1 CHROMAT_FILE:
MSMg01no141_n08.g1 PHD_FILE: MSMg01no141_n08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:42 2005
(723 letters)
>mm_chr2_3732771_3733893
Length = 1123
Score = 1214 bits (628), Expect = 0.0
Identities = 706/749 (94%), Gaps = 29/749 (3%)
Strand = Plus / Minus
Query: 1 agatttcctttgctcctcactttctgttccccgtcagaagccactgaagctgcctaagat 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 805 agatttcctttgctcctcactttctgttcccagtcagaagccactgaagctggctaagat 746
Query: 61 cccagacagggcaggcctttagatcttaagaagagagggacctctagtgttgagttactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccagacagggcaggcctttagatcttaagaagagagggacctctagtgttgagttactt 686
Query: 121 gtctactgctcgctgttgctgttcacccccagatttacctcttaccttgtgattattatg 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 685 gtctactgctcgctgttgctgttcacccccatatttacctcttaccttgtgattatt--- 629
Query: 181 agagtttctttgaaggctagtattcatttaaatgttaaaa-------------------g 221
||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agagtttctttgaaggctagtattcatttaaatgttaaaatttaaatttaaatttaaatt 569
Query: 222 ta----gt---aagtgggtttttttcccttcctggaaaactaagaaaattgagaatgggt 274
|| || |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 568 taaaatgttaaaagtgggtttttctcccttcctggaaaactaagaaaattgagaatgggt 509
Query: 275 aaatataagccagcatactagtttaaagaagacttgagcaaaatgtcacgtgattaaaaa 334
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aaatataagccaacatactagtttaaagaagacttgagcaaaatgtcacgtgattaaaaa 449
Query: 335 gtattattagacacctataaggtgctcagtagttaagagcacttgctgctcttccagagg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtattattagacacctataaggtgctcagtagttaagagcacttgctgctcttccagagg 389
Query: 395 acctgggttcagttctcagcactcacatcaggaggctcacaactatctgtgactccagct 454
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 388 acctgggttcagttctcagcactcacatcaggaggctcacaaccatctgtgactccagct 329
Query: 455 gcaggggatccaacaccctcttctggactcagccatcatcagcgatacacgtggtacaca 514
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 328 gcaggggatccaacaccctcttctggactctgccatcatcagcgatacacgtggtacaca 269
Query: 515 tacacatgtgcaggcaaatactcaaacgtaggaaataaaaataatagatttttaaagcat 574
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 268 tacacatgtgcaggcaaatactcaaatgtaggaaataaaaataatagattttttaagcat 209
Query: 575 ccattaaacctttgaccttagcatagggactaaaagccatttcaataagtctggaacatg 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ccattaaacctttgaccttagcatagggactaaaagccatttcaataagtctggaacatg 149
Query: 635 anaatataatcataataccagtttttcagtaggttccggaaagcaccgatcatgctctct 694
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 148 aaaatataatcataataccagtttttcagtaggttccggaaagcaccgatcccgctctct 89
Query: 695 gtcaggctgaatgtgagtttgtgtaggcc 723
||||||||||||||| |||||||||||||
Sbjct: 88 gtcaggctgaatgtgggtttgtgtaggcc 60
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
