BAC Information

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BAC

Clone NameMSMg01-142J10
Chromosome2 (Build37)
Map Location 87,642,243 - 87,642,508
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1
Downstream geneOlfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142J10.T7 (MSMg01no142_j10.b1)MSMg01-142J10.TJ (MSMg01no142_j10.g1)
ACCAG347161AG347162
length1,3282,015
length of high quality
(start - end)		269 (129 - 397)---
definitionCHROMAT_FILE: MSMg01no142_j10.b1 PHD_FILE: MSMg01no142_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:27 2005CHROMAT_FILE: MSMg01no142_j10.g1 PHD_FILE: MSMg01no142_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
AAAGGAAGAACAACCTTTTACTTCCCTTCTTCTTTGCATGTCTAAATGTT
TACACCCTGTTAATGACAATGCCCCCCATAGGTATTGCCTTCTGGATATC
AACAATGCACCTACAACACAGAATATAATTGGCTTCAGGTATTATTATTC
TAAAAGTAAGTCATAAGTCAGTTTAAAGATCCATAGCTTTTTAGTTGTAA
GATTGTTAAAGCTAACATCTCAGCTAGACTGTTTAGAAAATTTGATTAAA
TTTCCGTGTCATTCATGAAGCATGCTGCTTTCTACAAATTCCATAATTTC
TGTGAGTCAAATTTCCTAGGTATGGAGTATACTTATCTCAAGGATTTATT
TGAAATTCAAAATGACATCAAAGAAATCTGGCATTAGAGCCAGTGTAATC
GAGCTTATTCTGTGCTTTGGAGTATTCATGTGACACAGGAGGATCTCATT
GTCTCTTAAATGAATCATGCTGGATTTGAAACGAATTTTAATCAGTTATA
GAAGTATAGACTAGGCAATTGAATAATGTTAAAAGGCGTCTATTTTACTA
CACTTGATCCAGGTTTCCTCTGGAAAACTGTGTGTTTAGTAATACACAGT
CATTCTTTCCTATTTGTATCAGCCATGAGCCTACTACTGATAATCATTAT
ATCCTAAACTATTATGTCATTTTATTAAGCTTGATTTTACATTTGACTAT
TATATATATCACTGCCCATTGATAATTATTCCCGTCTTTTAATCACTCCC
ACCCCACCAATTGTCCCTCCTCATATTTATCAACTACCTAATTCCTCTCC
CACAACCTTTCTCTTTTCCCATATATCTCCTGTTTTCATTAACTTCAACT
AATCCTACGTTTATTGACTTTTTCCTTTTATTCCTTTCGATATTCTTCTT
CTATCCTCCTATTCACTTTTCCATTTTTTTTCTCTCTATTCTTTCTCTCT
CTAATAATTTCCTTCTAACTACTNTCTCTTTTCTCCCTTCCCCTTCTCCT
TATAATTTTTCTCTCTTTTCCTTCTCTTTTTCTACTTCTTCTTTCTTTCT
TTCCCTACCTCTTTATCTCTCTGCTTAACTCTCATCCCTATCTCCTTTTA
TTTCTCTACTATTCTTTCATAATCTCTTTCCTCCTTACTATTTTATTATT
ATCTCCTCTCTTACTTCTCTCTATCACCCCCTCTTCACCTCTATTCTCTC
TTCATCGCTCTCCTTATATTCTTCTCATTCTCTCCTGATTCTCTCTTCAT
ATACACTCATCCTCCCTCTCTTTCTATA

ACACCTCATCTCGCCACTCTCACATACCCTCTCTTCTCGGAGGATACGTG
CACCCGCGGGCATCCCTCCCTGCCGGTCCCATCCCACACTCTTCTCTAGG
GGGGCTCCCCCCTCACTATACGGGGGGCAGTGAGGGGTGGAACCTCTTTA
TAAGAGAGGCGCGCCACTCTTTAAAAGGAAACAGTCATAACGCACCAACA
GGGGAGGGAGCCCCGTTTAGTAAGAGAGTCCGCCTCTCGCCCCCCCCCCC
CCGAGAAGCCTATGAGACAGCCCCGCAATCCGAGGCACTGGTCCGATCCC
TCTAGGGGGGTCAGCAGTGCACCCGCCACTAGCAGACCGGCATCCGCCCG
ACCTCACGCCAGACTTCCACCCCTAAACCCCCGAACGGAGGCGCAGGGCC
CCGTGAGCCCCACTCGCCCGATTCCCGACACTCCCCCCTCCAGCGTGGCC
CCGGTCACGACTTCCCGCTCCCCCGCCCCCTCCGCCGCCACCGCCCTGCC
GCCGCTATCCCCCCACACCTATTACGAACCGCTCGCGAGAACCCGGTTGG
GCTCCGACTCATGCTCCGGCGGGCCCTCGCCCGCGCCCTCCCACAGCTAC
CTCGCTGCCTCGCCGAACCTCGCCGTTCAAGACGCGCCCGCCAGCTGCTC
CTCACATCCGAGCACAAGATCTCTTTTATGTTCTGTTCTCTCTCTCTTTA
CACCTACGACGATACGCACTCCATACTTATATCTCCTGAGGATTCCTCTT
TTTTTTTATTGTTCTCTTGGTTATGTTCTATACTCCACCTTTTCTTGTTT
TTCTTACAATGTATCTCGTTGCCTTCTCTTCCTATTCTTTTTAGTCTCTG
TTCTCTTTCCTCCTCTCTTCTTACCCTTGTCCTATACCGCCCGTTTTTTC
TTTTTCTTTTTTCTTCTCCTTTTTTCTTCTCTCTCTCTTCTTCTTTTCCT
TCTCTTTTCTTTTTTTCTTTTTCCTTTTTTCTTTTCTTTTTTTCTCTTTT
TCCTCTTTATTCTTCTCTTTTCCTCTTTTTTTTTCTTCTTCTCTTCTCTC
TTCTTTTTTTTTTTCTCTTCTTTCTCTTCTTTCTCTTTTCTTCTTTCTTC
TCCTTTTTTCTTTTTCTTTTTTTTCTTTTCTTTCTCTTTCTTCTTATCTT
CTCTCCCTTTTTTTTTTTTCTTTTTTCTCGATCTTTTTCTTCTTTCTTTC
TCTTTTTCTTATTTTCCGTTTTCCTGTTCTTTCGTTCTTTTCTTGTTTTT
CTTTTTTTTTTCCTTTTTCCTCTCATCGTTCCTTTTATTTTATCTTTCCT
TTCTCTCTATGTAGGGTATTAACATTTTCCCTTTTTTTTCTTGACAATCC
CCCACTGCTACCTCCAAGATCCACGCGCTCTACTACTCTTCCACACTGAA
CCCGCACCCACTACTCCAGAGACAAAGGTGACCCCCTTTTTCCTCACCTT
TCCCCCTCCCTTCCTCCTGCCTCCGCGCGTCAGTCCTAGTTTCCCCCCCC
GGGGCCTCCCCTCGCTATTCTGCCCCGCGCGCTTTGTTAAAATTGCGCTG
TTTTCGTCCCTCACCACTATCCTCTGTCCGGTCGCCCCTGTTGACCTTTA
TCTCCCCATATCATCCGACATCATAGGGCCAACGTCGCGAGCCCCCCGGA
GCATGACGCACACACGCGCCACCGCCGTGCATGCGCTCCACACACTTCGC
CTCACATGCCCGCACCCCCCCTGCACCCGCACCGTAGTCTCTCGGACACA
CCACGACCCTGCCGCCACGTAAGGGCCCCCCACCGGGGCGCCCGCCCCCC
CCCCGAAAGCGTGGACGCCATAGATCACCGCGACCCAGCCCCACCAGCGC
CCCCCCCGTACACACGCTCGTCTCCACACGCCCCGAGTAAAAGCGTGAGC
ACCCAACCGAGCCGACATTCCTCTACCTCGCGCCTGGCACCGCCCCCGGC
ACACGCCCCGCACACACCATCTTGGGGCACGCATTGCTGCAACTACCGTC
TTGCCATGATCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_j10.b1 MSMg01no142_j10.b1 CHROMAT_FILE:
MSMg01no142_j10.b1 PHD_FILE: MSMg01no142_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:27 2005
         (269 letters)



>mm_chr2_87642043_87642711
          Length = 669

 Score =  491 bits (254), Expect = e-143
 Identities = 263/266 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtattgccttctggatatcaacaatgcacctacaacacagaatataattggcttcag 60
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 466 taggtattgccttctggatatcaacaatgcccctacaacacagaacataattggcttcag 407

                                                                       
Query: 61  gtattattattctaaaagtaagtcataagtcagtttaaagatccatagctttttagttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtattattattctaaaagtaagtcataagtcagtttaaagatccatagctttttagttgt 347

                                                                       
Query: 121 aagattgttaaagctaacatctcagctagactgtttagaaaatttgattaaatttccgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagattgttaaagctaacatctcagctagactgtttagaaaatttgattaaatttccgtg 287

                                                                       
Query: 181 tcattcatgaagcatgctgctttctacaaattccataatttctgtgagtcaaatttccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 286 tcattcatgaagcatgctgctttctacaaattccataatttctgtgagtcaaatttcctt 227

                                     
Query: 241 ggtatggagtatacttatctcaagga 266
           ||||||||||||||||||||||||||
Sbjct: 226 ggtatggagtatacttatctcaagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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