Query= MSMg01no142_k01.b1 MSMg01no142_k01.b1 CHROMAT_FILE:
MSMg01no142_k01.b1 PHD_FILE: MSMg01no142_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:33 2005
(740 letters)
>mm_chr2_6532345_6533484
Length = 1140
Score = 1353 bits (700), Expect = 0.0
Identities = 730/740 (98%)
Strand = Plus / Plus
Query: 1 gccaaagaaaccccaaagttagaagtcctcttaaaagcctgaaggatgccagggtctctt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gccaaagaaaccccaaagttagaagtccttttaaaagcctgaaggatgccagggtctctt 260
Query: 61 gttcttgtgcctctttcaaaggggcacagagcttgtgtatctcaaatagaagaacatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcttgtgcctctttcaaaggggcacagagcttgtgtatctcaaatagaagaacatgac 320
Query: 121 ttaagttactgtgcagcatgaaggaggcttcaaaggaggaatagttacttacaaattaat 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ttaagttactgtgcggcatgaaggaggcttcaaaggaggaatagttacttacagattaat 380
Query: 181 tatcacctgacaaaggatgactgcagccaatgtttgctgtgtctttctgcactggccggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcacctgacaaaggatgactgcagccaatgtttgctgtgtctttctgcactggccggg 440
Query: 241 aggtcaatcacacagtaccacataacacttgggcacgtgcattagtgatctaatctgtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtcaatcacacagtaccacataacacttgggcacgtgcattagtgatctaatctgtca 500
Query: 301 gtgttgggttaggatattgataacattaacacatcaatcatttatctatggcatctgaat 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgttgggttaggatattgaaaacattaacacatcaatcatttatctatggcatctgaat 560
Query: 361 ttgggtcagactaggacccacttagcagctggaagatctcatcacttacatggggctgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgggtcagactaggacccacttagcagctggaagatctcatcacttacatggggctgga 620
Query: 421 agattatttggaacaagacggcataatgtagtcagtattccaagagacatgtgatgaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agattatttggaacaagacggcataatgtagtcagtattccaagagacatgtgatgaaag 680
Query: 481 tttacaatgcagatgaatatttaggtactgggtggacaaaactaaactgatcaatacagt 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 tttacaatgcagatgaatatttaggtactgggtggacaaaaccaaactgatcaatacagt 740
Query: 541 ctagtccatacacctgtactgatcattcaaaagccctatcttaatatactgcttgaatac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagtccatacacctgtactgatcattcaaaagccctatcttaatatactgcttgaatac 800
Query: 601 aaacaaggagcaaacgaggacttaactgctaagccctgtctgtgctcttccctgaaaata 660
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 aaacaaggaacaaacgaggacttaactgctaagccctgtctgtgctcgtccctgaaaata 860
Query: 661 ttcatatgtcaagggtctagacaggggaattccgggacacagctggagtactcttataca 720
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 861 ttcatatgtcaagggtctaggcaggggaattctggaacacagctggagtactcttataca 920
Query: 721 aggagaaagaaagctaccgt 740
||||||||||||||||||||
Sbjct: 921 aggagaaagaaagctaccgt 940
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 740
Length of database: 1140
Length adjustment: 10
Effective length of query: 730
Effective length of database: 1130
Effective search space: 824900
Effective search space used: 824900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_k01.g1 MSMg01no142_k01.g1 CHROMAT_FILE:
MSMg01no142_k01.g1 PHD_FILE: MSMg01no142_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:33 2005
(694 letters)
>mm_chr2_6704304_6705395
Length = 1092
Score = 1247 bits (645), Expect = 0.0
Identities = 681/694 (98%), Gaps = 2/694 (0%)
Strand = Plus / Minus
Query: 1 atcagtatgtggncttaaaaatattggaccttttaaaaaaaaggagaacacatcagcttg 60
|||||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||||
Sbjct: 892 atcagtatgtggtcttaaaaatattgta--tttaaaaaaaaaggagaaaacatcagcttg 835
Query: 61 ttatttttagtatacaatacgaatcacaaatatctaagtaattcttactttataacacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ttatttttagtatacaatacgaatcacaaatatctaagtaattcttactttataacacaa 775
Query: 121 ctccattttctctgtagaaacggcttctgctataagacagaacaaaatttacataactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctccattttctctgtagaaacggcttctgctataagacagaacaaaatttacataactta 715
Query: 181 ttcttctggcaacttaactggatttttttttctgcccaggttttggatagcaataaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 714 ttcttctggcaacttaactggatttttttttctgcccaggttttggatagcgataaaatg 655
Query: 241 tctttatatattaatgtgtattttccttaaaatgagcttttcttctgccatcacacccag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctttatatattaatgtgtattttccttaaaatgagcttttcttctgccatcacacccag 595
Query: 301 gccagtatcagtcactcttgtaggaacatgtgctatttttcctcaaattctgggtcctat 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 594 gccagtatcagtcactcttgtaggaacgtgtgctatttttcctcaaattctgggtcctat 535
Query: 361 tctcctcctagtattaagtatctgtctgtatccacacaacactgccttccacatctttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctcctcctagtattaagtatctgtctgtatccacacaacactgccttccacatctttat 475
Query: 421 ctcacgtccttctttttgcttacatttcagttgcttttcattggatttacagtgacgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctcacgtccttctttttgcttacatttcagttgcttttcattggatttacagtgacgtgt 415
Query: 481 gagtgtcaaatggaaactgaaatgccctgctttccttttccctccacagcatgcatcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gagtgtcaaatggaaactgaaatgccctgctttccttttccctccacagcatgcatcata 355
Query: 541 atcatgctgactccattccttcaccctcagctgctagttaaacactcatcctcttccgtg 600
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 354 atcatgctgactccattccttcaccctcagctgctaattaaacactcgtcctcttccgtg 295
Query: 601 ttctttcctatgtagaatttaaaactctacacctctctcttgatagatagacagcccctc 660
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttctttcctacgtacaatttaaaactctacacctctctcttgatagatagacagcccctc 235
Query: 661 tcctcagttgtgtaattgcaataacttcttcagt 694
||||||||||||||||||||||||||||||||||
Sbjct: 234 tcctcagttgtgtaattgcaataacttcttcagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1092
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1082
Effective search space: 740088
Effective search space used: 740088
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
