Query= MSMg01no143_d10.b1 MSMg01no143_d10.b1 CHROMAT_FILE:
MSMg01no143_d10.b1 PHD_FILE: MSMg01no143_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:42 2005
(442 letters)
>mm_chr2_103488983_103489824
Length = 842
Score = 783 bits (405), Expect = 0.0
Identities = 430/441 (97%), Gaps = 6/441 (1%)
Strand = Plus / Plus
Query: 5 gaattcacgttttctcggtgtctgttcctggtgtgatttatttctgtcttgagatgtccc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgttttctgggtgtctgttcctggtgtgatttatttctgtcttgagatgtccc 264
Query: 65 tcccttcagtagattataagctgaccctagtgtaggtgtcccagctgaaatcagaaactg 124
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 tcccttcagtagattataaactgaccctagtgtaggtgtcccagctgaaattagaaactg 324
Query: 125 gcagtggttagagccagggagagtgaggccttaatacctaccctaacacttctactctgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagtggttagagccagggagagtgaggccttaatacctaccctaacacttctactctgt 384
Query: 185 tttagggaacagtgatatcctgatgtttagctggaatagttatgtcaggaaaaaaataac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttagggaacagtgatatcctgatgtttagctggaatagttatgtcaggaaaaaaataac 444
Query: 245 caggaattaggtttcatttaagcaggtttcagaatgtcctcagagccactgtggaatcat 304
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaattagctttcatttaagcaggtttcagaatgtcctcagagccactgtggaatcat 504
Query: 305 ggctactccctctggttatggttcctggaatagatgagagaattaatgactttaacttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctactccctctggttatggttcctggaatagatgagagaattaatgactttaacttct 564
Query: 365 gtcccccc---tcccttatgtgtagaacagtaacttgagtttgagctttgtctaaggagg 421
| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 g---ccccatttcccttatgtgtagaacagtaacttgagtttgagttttgtctaaggagg 621
Query: 422 aagaaagaaaggatattaggc 442
|||||||||||||||||||||
Sbjct: 622 aagaaagaaaggatattaggc 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d10.g1 MSMg01no143_d10.g1 CHROMAT_FILE:
MSMg01no143_d10.g1 PHD_FILE: MSMg01no143_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:43 2005
(502 letters)
>mm_chr2_103564596_103565498
Length = 903
Score = 934 bits (483), Expect = 0.0
Identities = 498/503 (99%), Gaps = 1/503 (0%)
Strand = Plus / Minus
Query: 1 caggagaaacacaagaaggaagtcgggaagctgaaggacatggacctctctcagtaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 caggagaaacacaagaaggaagtcgggaagctgaaggacatggacctctctcagtaagcc 644
Query: 61 cctcccatctcagggaatcagttcttcccagtctccatggcctgtagactttgctaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cctcccatctcagggaatcagttcttcccagtctccatggcctgtagactttgctaaagg 584
Query: 121 tgtcctaccacacaccccacaggctcataactgtttcagaagtaccacagctgagatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtcctaccacacaccccacaggctcataactgtttcagaagtaccacagctgagatctg 524
Query: 181 caatctgtctcattcccaggatcccagagttcttgtcactttgggtttgtgttactgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatctgtctcattcccaggatcccagagttcttgtcactttgggtttgtgttactgcca 464
Query: 241 ggcccttccaggaagggggtgctgagcagggcacctcccacctggagtagtcccttcctc 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 463 ggcccttccaggaagggggtgctgagcaggacacctcccacctggagtagtcccttcctc 404
Query: 301 acgtttgtcgttttccttctgttc-tgttgagtgttacttgcgatgtttcctttctagcc 359
| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 403 atgtttgtcgttttccttctgttcctgttgagtgttacttgtgatgtttcctttctagcc 344
Query: 360 accccagggtgacagatctgacagtcctgctgcttcaggcctttccccgtaactaactct 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 343 accccagggtgacagatctgacagtcctgctgcttcaggcctttccctgtaactaactct 284
Query: 420 aggcttggagccacagaacttgtccgcagccaggtcattggttgatcagattgagcaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggcttggagccacagaacttgtccgcagccaggtcattggttgatcagattgagcaata 224
Query: 480 ccataaggccatttcagggtctc 502
|||||||||||||||||||||||
Sbjct: 223 ccataaggccatttcagggtctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
