Query= MSMg01no143_d23.b1 MSMg01no143_d23.b1 CHROMAT_FILE:
MSMg01no143_d23.b1 PHD_FILE: MSMg01no143_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:45 2005
(680 letters)
>mm_chr2_50501920_50502999
Length = 1080
Score = 1290 bits (667), Expect = 0.0
Identities = 673/675 (99%)
Strand = Plus / Minus
Query: 5 gaattcttgtcttattccgggagtgtatgaacatatcataattttaaatatgcattttcc 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattcttgtcttattctgggagtgtatgaacatatcataattttaaatatgcattttcc 820
Query: 65 tttattattggccatacttcttgtatagcctcctcaagcttggaggctatgggtgagcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tttattattggccatacttcttgtatagcctcctcaagcttggaggctatgggtgagcag 760
Query: 125 tagaagtgacttgccaataagaactcacctgcagctattactgtctgtgatcatgattac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tagaagtgacttgccaataagaactcacctgcagctattactgtctgtgatcatgattac 700
Query: 185 tgtatgctgacacattttgactttcaataaccagttcttggctcaaaattttgccacttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgtatgctgacacattttgactttcaataaccagttcttggctcaaaattttgccacttg 640
Query: 245 agtctatggtctaggctatggtaacagtaacgtttgtaagcacatcggccttaaaacata 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 639 agtctatggtctaggctatggtaacagtaacgtttgaaagcacatcggccttaaaacata 580
Query: 305 tatcaggttcttattatctataccaattttgcttttatttagtcactgtttggagagcct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tatcaggttcttattatctataccaattttgcttttatttagtcactgtttggagagcct 520
Query: 365 tcatataaagtgtatgagttagggttctgacctgttttcttttgtttgcttaatggtaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tcatataaagtgtatgagttagggttctgacctgttttcttttgtttgcttaatggtaaa 460
Query: 425 gcaaatgctaacctttcctcattgttgttaggtgagaaagaggaattgcagtagctggtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gcaaatgctaacctttcctcattgttgttaggtgagaaagaggaattgcagtagctggtg 400
Query: 485 actaacttgcttgtctgaaagacctttcatcttgtaacaagcaggtggctttcaggtgtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 actaacttgcttgtctgaaagacctttcatcttgtaacaagcaggtggctttcaggtgtg 340
Query: 545 gtcatgtagctggctggtgttaataatctgtccagacatctatgcaaacattacttcaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtcatgtagctggctggtgttaataatctgtccagacatctatgcaaacattacttcaga 280
Query: 605 cagagaggctttatagacaccatgcatgcatgtcctcctcgctctcagcctagaggacca 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cagagaggctttatagacaccatgcatgcatgtcctcctcgctctcagcctagaggacca 220
Query: 665 tgataaagcgcctag 679
|||||||||||||||
Sbjct: 219 tgataaagcgcctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_d23.g1 MSMg01no143_d23.g1 CHROMAT_FILE:
MSMg01no143_d23.g1 PHD_FILE: MSMg01no143_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:45 2005
(551 letters)
>mm_chr2_50350651_50351608
Length = 958
Score = 1007 bits (521), Expect = 0.0
Identities = 546/560 (97%), Gaps = 11/560 (1%)
Strand = Plus / Plus
Query: 1 attgaagctcttcaaatttttctataaaatgtccactaaaaagcatgaagtcttaaagga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attgaagctcttcaaatttttctataaaatgtccactaaaaggcatgaagtcttaaagga 260
Query: 61 ttaaatcatcttttacaaaagggatggtgacactccttcttttcctcaaccacatgagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaatcatcttttacaaaagggatggtgacactccttcttttcctcaaccacatgagag 320
Query: 121 aaagaatgttatgctgtaaattccgatgtaatcttaactgtggggactttgatctgaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaatgttatgctgtaaattccgatgtaatcttaactgtggggactttgatctgaggg 380
Query: 181 aggagagggtcttcctaaagagttcaagctggtgcaaagctgccagagcacgcaaggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagagggtcttcctaaagagttcaagctggtgcaaagctgccagagcacgcaaggcac 440
Query: 241 tgagaactctaggttctacaggaagcagcaggatgaaggtgctggactgacacattcaat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaactcaaggttctacaggaagcagcaggatgaaggtgctggactgacacattcaat 500
Query: 301 aagtcggtcacaggggcaaaatgtgctcagctggcccatagctctgctctctttatgtca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcggtcacaggggcaaaatgtgctcagctggcccatagctctgctctctttatgtca 560
Query: 361 gaatgaatgttggtttgctggctttttttttttt----aaattcactctccaggatttat 416
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 gaatgaatgttggtttgctggcttttttttttttttttaaattcactctccaggatttat 620
Query: 417 tttacttatagattttacttaggagttgcttcctgttttacataggcagcagggggagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttacttatagattttacttaggagttgcttcctgttttacataggcagcagggggagga 680
Query: 477 gaaggggg-----ggagttcagnctgatgttggaacagcctgaggtctctcattgttaca 531
| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 g--gggggaggggggagttcagcctgatgttggaacagcctgaggtctctcattgttaca 738
Query: 532 gctggaccccttccaataat 551
||||||||||||||||||||
Sbjct: 739 gctggaccccttccaataat 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 958
Length adjustment: 10
Effective length of query: 541
Effective length of database: 948
Effective search space: 512868
Effective search space used: 512868
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
