BAC Information

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BAC

Clone NameMSMg01-143J18
Chromosome2 (Build37)
Map Location 119,047,357 - 119,048,014
singlet/doubletsinglet
Overlap genePpp1r14d
Upstream geneFsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19
Downstream geneSpint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J18.T7 (MSMg01no143_j18.b1)MSMg01-143J18.TJ (MSMg01no143_j18.g1)
ACCAG347910AG347911
length707740
length of high quality
(start - end)
662 (43 - 704)48 (67 - 114)
definitionCHROMAT_FILE: MSMg01no143_j18.b1 PHD_FILE: MSMg01no143_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:13 2005CHROMAT_FILE: MSMg01no143_j18.g1 PHD_FILE: MSMg01no143_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGATTGTCGTCCTTTGATCTCTACATGTGAATAATAACATATGTGT
GCACACACTCCAACACGAATCACACATATATGAACACACACAATAATAAA
TTTTGGAAAACAAAAAACAGCAGGTGTGGTGGTGCATACCTTTAATCCCA
GCACTTGGGAGGAAGAGGTAGACAGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACAGAGTGAGTTCCAGGACAGTGAGGAGCCCTGAGAAACCCTGTCTC
AAAAAACAAACAAACAAACAAACAAACAAACAAACAAAAAGAGTCAAGGC
AGGAAGATTAGAAATTCAAGGTCATCCTAGGCTACATAGAAGGTTTAAGG
CTAGCCTGGGTGGCCACCCGGGAGGCTGGAGAGATAACATCTGAAGTGCT
TGCTACACAGGCATGAGGGTCTGCGGTGGATCCTCAGCACCTACATCAAA
AGGTGGCCTGTGTCAAGTGCCTGTAATCCCAGAGGCAGGGCAGAGCTCGG
AGTATCACTGGGACTTGCTGGTCTGCTAGCCTCACCTACAAACCAACTAG
CCCTCAGTCCCAGGGAGAGACCTGATCTCAAACATACAAGGTGTGGACAG
GCCTGGAAAAAATGTCTCACTGGTTAGGGGCACCTGCTGTTCTTGCAGCA
CCCACAA
ACATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCAGGATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAC
AAATCCGCCTGTCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCA
CCACACCCGGCCACCTAGTAGAATTCTTAAAAATTACTGCGTGTGTGTGT
GTGTGTGTGTCCGTCTCCCCCCACCTGCTCTGACCCCTACCCTGACCCCC
CTTCTCTACCTCTCTTCCTTCCCTCCCTCTCGTTTCGCTGATACTTATCG
TGTACCCCTCGTCCCCCTTTTTTTTCTACCCCCTGTCACGCATCTCCTTC
CCATTTTTCCCTTTTTTTCTCCCCATCTCCCCCCGACATCCTCCCCTATT
AATCTCCCGATTTTTTCCCCCCCCTATTTAATAAATATCCTACCTCCCTA
CTCTCTTCTACTTCCTTCTCCCTCCCCTCCCCCCCCTCTCCTTCTGCCCC
TTTCCCCTCTTCTTTCCCTCCCCCCTCTCTATCCTCCCCTACCCCTTCCC
CCCCCCATTACCCCCATTTCTCCCCTCTTCTTCCCTTTTCCTCCCCTCCC
ACCCCCTCCATTTTTCCCCCTATCCCCCCTTCTTTCCCTTTCTTTTTCCT
CTATCTTCCCTTCCCCCCATCTTCCCCTTCTTCCTCTTCTTCCTTTTCGA
CCCTTCCCCCCCCCCCGCCTCTCTCTTCTCTTTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j18.b1 MSMg01no143_j18.b1 CHROMAT_FILE:
MSMg01no143_j18.b1 PHD_FILE: MSMg01no143_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:13 2005
         (662 letters)



>mm_chr2_119047153_119048214
          Length = 1062

 Score = 1226 bits (634), Expect = 0.0
 Identities = 652/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgattgtcgtcctttgatctctacatgtgaataataacatatgtgtgcacac 64
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaaagttgtcctttgatctctacatgtgaataataacatatgtgtgcacac 264

                                                                       
Query: 65  actccaacacgaatcacacatatatgaacacacacaataataaattttggaaaacaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actccaacacgaatcacacatatatgaacacacacaataataaattttggaaaacaaaaa 324

                                                                       
Query: 125 acagcaggtgtggtggtgcatacctttaatcccagcacttgggaggaagaggtagacaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagcaggtgtggtggtgcatacctttaatcccagcacttgggaggaagaggtagacaga 384

                                                                       
Query: 185 tttctgagttcgaggccagcctggtctacagagtgagttccaggacagtgaggagccctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctgagttcgaggccagcctggtctacagagtgagttccaggacagtgaggagccctg 444

                                                                       
Query: 245 agaaaccctgtctcaaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaagagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaccctgtctcaaaaaacaaacaaacaaacaaacaaacaaacaaacaaaaagagtca 504

                                                                       
Query: 305 aggcaggaagattagaaattcaaggtcatcctaggctacatagaaggtttaaggctagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggcaggaagattagaaattcaaggtcatcctaggctacatagaaggtttaaggctagcc 564

                                                                       
Query: 365 tgggtggccacccgggaggctggagagataacatctgaagtgcttgctacacaggcatga 424
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgggtggctaggcgggaggctggagagataacatctgaagtgcttgctacacaggcatga 624

                                                                       
Query: 425 gggtctgcggtggatcctcagcacctacatcaaaaggtggcctgtgtcaagtgcctgtaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggtctgcggtggatcctcagcacctacatcaaaaggtggcctgtgtcaagtgcctgtaa 684

                                                                       
Query: 485 tcccagaggcagggcagagctcggagtatcactgggacttgctggtctgctagcctcacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcccagaggcagggcagagctcggagtatcactgggacttgctggtctgctagcctcacc 744

                                                                       
Query: 545 tacaaaccaactagccctcagtcccagggagagacctgatctcaaacatacaaggtgtgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tacaaaccaactagccctcagtcccagggagagacctgatctcaaacatacaaggtgtgg 804

                                                                     
Query: 605 acaggcctggaaaaaatgtctcactggttaggggcacctgctgttcttgcagcaccca 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acaggcctggaaaaaatgtctcactggttaggggcacctgctgttcttgcagcaccca 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)