BAC Information

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BAC

Clone NameMSMg01-143K12
Chromosome2 (Build37)
Map Location 71,541,410 - 71,705,080
singlet/doubletdoublet
Overlap geneGm1631, Itga6
Upstream geneTlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2
Downstream genePdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K12.T7 (MSMg01no143_k12.b1)MSMg01-143K12.TJ (MSMg01no143_k12.g1)
ACCAG347945AG347946
length701669
length of high quality
(start - end)		313 (73 - 385)337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no143_k12.b1 PHD_FILE: MSMg01no143_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:16 2005CHROMAT_FILE: MSMg01no143_k12.g1 PHD_FILE: MSMg01no143_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,541,410 - 71,541,722)(71,704,752 - 71,705,080)
sequence
NNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCC
GCGGAATTCCAGAATTAGCAAGAAGAAGGGAAAAGTGACAAAGTGATACC
AGGAAATTTCCTGTGGCTCTGGAAAGATTCCACAGCAGTTCCCACCATTC
GACATTTTAAAGCTGTGGATGCAAAGACCAAATTCACCTCTCCCTGGAGA
CAAAACACACTCCATTCAAAGACTAGGTCTGGGGATGACATGGGACTTCA
AGCTGCAACCTTAGGGACCAGAAGACAAAGAAAGGGACATGTCAATATGT
TTTGTCTTTAGAGCCTATTGCTTTAACCCAAACAATTAATATATCTTTTT
TGTGTTTGTTTTGGTTTGGTTTTGGTTTTGGTTTTGGTTTTACCCTTCTA
ACCCCATTAATTTTTGTGTGCCCCCCCCATTTTTTCCTCCTATTATACAA
CAAATTTTTTATTTTATATAAATTATAATTCCCAAATTTGCCTTTTTCAC
ACCCAAACATCATTTGGGTTACATAATTTTTTTTATTATATCTCATATCT
CTTCATATTTTTCCATTAATTTCAAATCACTTATTATATTCCGCCTCCAT
TGGATCTATTTTTCCAAACTAATTCTTTCTTATCCCCTCCACCCCATACT
CACCTCATATTTTATCACAAAGTTTCTCCTAACTATAAATATTTACTTTG
G

NCCTCGATGCANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCAGGCTACATAG
AATCTCATAGAGATTCACCTGTTTCAGCCTCCAGAGTGCTGTGATTAAAA
ACAAGGACTACTAAACACCTGGCTTTGGAAACATTGTTCTTTATTTAGAA
AAAGTACTTTGAAGAAGTGAGGAAAAGATACCTAACCCCCATGCCCCAGT
AAGGCTCACAAGGAAGAATCCACTTCCTTAAGCTAAAGAGAACACAGGAG
GACAAAGGGCAGGAAATGGTCTGGTTCCTGTCAGGTGCAGTCCTTTTGTT
TTCGTTTTAGAGACACTTTCTTTCTAGTTAACCTTGGCTGACCTGAAACT
AGCTACGCAACTCACATACACCACCCTGCCTCTGCTGAGATTAAAGATTT
GCACCACCATCCAGGGCTATGAGCAGTTAGTCCTTGAAGACCCCTCATTG
AGTAGTTAAAAAATAAAAATAAAAAAAACAGTTGAGCTGGAGAGATGGCT
CAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCTAATAC
CAGGAACCACATGGTGGCTCACAACCATCATGGGTATCCGATGCCACCTT
CTGGCGTATCTGAAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k12.b1 MSMg01no143_k12.b1 CHROMAT_FILE:
MSMg01no143_k12.b1 PHD_FILE: MSMg01no143_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:16 2005
         (313 letters)



>mm_chr2_71541210_71541922
          Length = 713

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaagggaaaagtgacaaagtgataccaggaaatttcctgtggctctggaaagattcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaagggaaaagtgacaaagtgataccaggaaatttcctgtggctctggaaagattcca 260

                                                                       
Query: 61  cagcagttcccaccattcgacattttaaagctgtggatgcaaagaccaaattcacctctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcagttcccaccattcgacattttaaagctgtggatgcaaagaccaaattcacctctc 320

                                                                       
Query: 121 cctggagacaaaacacactccattcaaagactaggtctggggatgacatgggacttcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggagacaaaacacactccattcaaagactaggtctggggatgacatgggacttcaag 380

                                                                       
Query: 181 ctgcaaccttagggaccagaagacaaagaaagggacatgtcaatatgttttgtctttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcaaccttagggaccagaagacaaagaaagggacatgtcaatatgttttgtctttaga 440

                                                                       
Query: 241 gcctattgctttaacccaaacaattaatatatcttttttgtgtttgttttggtttggttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctattgatttaacccaaacaattaatatatcttttttgtgtttgttttggtttggttt 500

                        
Query: 301 tggttttggtttt 313
           |||||||||||||
Sbjct: 501 tggttttggtttt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no143_k12.g1 MSMg01no143_k12.g1 CHROMAT_FILE:
MSMg01no143_k12.g1 PHD_FILE: MSMg01no143_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:16 2005
         (337 letters)



>mm_chr2_71704455_71705191
          Length = 737

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtagaccaggctacatagaatctcatagagattcacctgtttcagcctccagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 actatgtagaccaggctacatagaatctcatagagattcacctgtttcagcctccagagt 567

                                                                       
Query: 61  gctgtgattaaaaacaaggactactaaacacctggctttggaaacattgttctttattta 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 566 gctgtgattaaaaacaaggactacttaacacctggctttggaaacattgttctttgttta 507

                                                                       
Query: 121 gaaaaagtactttgaagaagtgaggaaaagatacctaacccccatgccccagtaaggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gaaaaagtactttgaagaagtgaggaaaagatacctaacccccatgccccagtaaggctc 447

                                                                       
Query: 181 acaaggaagaatccacttccttaagctaaagagaacacaggaggacaaagggcaggaaat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acaaggaagaacccacttccttaagctaaagagaacacaggaggacaaagggcaggaaat 387

                                                                       
Query: 241 ggtctggttcctgtcaggtgcagtccttttgttttcgttttagagacactttctttctag 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gggctggttcctgtcaggtgcagtccttttgttttcgttttagagacactttctttctag 327

                                        
Query: 301 ttaaccttggctgacctgaaactagctac 329
           |||||||||||||||||||||||||||||
Sbjct: 326 ttaaccttggctgacctgaaactagctac 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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