BAC Information

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BAC

Clone NameMSMg01-143M05
Chromosome2 (Build37)
Map Location 53,279,517 - 53,279,877
singlet/doubletsinglet
Overlap geneLOC666872
Upstream geneArl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2, Prpf40a, Arl6ip6
Downstream geneLOC666876, LOC207933, Rprm, LOC666913, LOC626563, LOC100041792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143M05.T7 (MSMg01no143_m05.b1)MSMg01-143M05.TJ (MSMg01no143_m05.g1)
ACCAG348024AG348025
length680676
length of high quality
(start - end)
369 (45 - 413)426 (71 - 496)
definitionCHROMAT_FILE: MSMg01no143_m05.b1 PHD_FILE: MSMg01no143_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:24 2005CHROMAT_FILE: MSMg01no143_m05.g1 PHD_FILE: MSMg01no143_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAAAATTTGCGGCGCTATACGACTCCTATTTCCAAGAAGGCGCGGAAT
TCTAGAGATAGCCCTTTCTAATGACCAAGAAGCATGTAAAGAAATGTTCA
ACATCCTTAGCCATTAGGATGGGGAAATGCAAATTAAAATGATTCTGAGA
CTATCTTATTTATACTCGTCAGAATGGCTAAGATTAAAAACTCGAGTGAC
AGCTCATGCTGGTGGGAATGTGAAGTAAGGGAAATACTCCTCCATTGCTG
TCCATAGTGCAAACATGTACAGCCACTTTGGAATTTAATTTGGCAGTTTC
TCAGAAAATGGGGAATGGTTCTATCTCAAGACCCACTTGTACCACTCCTG
GACATATACCCAACAGATGCTCCACCATAAGACAAGGATACTTGCTTAAG
TATATTCATAGCAGCCCCCCTAATAATTGCCAGAAACTGAAAACCTAAAT
GTCCCCCAACTGAAGAATGGATAAAGAAAATATGGTACCTTTATACAATG
GAGTATTACTCATGTATTAAAAACAATGACATCATGAAATTTGTAAGGCA
ACACCGATGGAATTAATAAAATCATTCTGAGTGAGTCTGAGTGAGTCCGA
CTCTTAAAGACTAACCGCATATATTCACTTATACGCTGCTATTAATCCTC
CAGTTCTGGACAAACATGCTATATTCTCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAAT
GGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGT
TGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAA
TCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAA
GCTTTGGAGTTTCATGAGGCCCATTTGTCAATTCTCGATCTTACAGCACT
AGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGGGGCACTCACTTTTG
AGCCACTGCTTGGCTTATAGCAAATTATTCCCAACAACTGTATCCTATAG
AACGCCTTTTAAACACCAAGCCTTGGCTTTCAAATAATACCAATCCTAGT
ATTTTGTTATTCCTCTTCATTACCTGAAGTTGAAAATATATGAGGTACTA
CAGCTTGAACACGGGCAGAAAGGGTAAGCAAATAATGTTTCCTTTTCCTA
ATTTGCTTTCTAACTACATACTTTAACCTATTTCACTTCATCGGAACTTT
TTTTTCTATTATAATCTAACTAGAACCAGCTACCCTGTTTGTAAGTCCTA
AAAATATACTAATTCGATTTAACGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_m05.g1 MSMg01no143_m05.g1 CHROMAT_FILE:
MSMg01no143_m05.g1 PHD_FILE: MSMg01no143_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:24 2005
         (426 letters)



>mm_chr2_53279052_53279877
          Length = 826

 Score =  667 bits (345), Expect = 0.0
 Identities = 357/361 (98%)
 Strand = Plus / Minus

                                                                       
Query: 65  agttctttatatatgttggatattagtcccctatctgatttaggataggtaaagatcctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agttctttatatatgttggatattagtcccctatctgatttaggataggtaaagatcctt 767

                                                                       
Query: 125 tcccaatctgttggtggtctttttgtcttattgacagtgtcttttgccttgcagaagctt 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 766 tcccaatctgttggtggtctttttgtcttattgacggtgtcttttgccttgcagaagctt 707

                                                                       
Query: 185 tggagtttcatgaggcccatttgtcaattctcgatcttacagcactagccattgctgttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggagtttcatgaggcccatttgtcaattctcgatcttacagcactagccattgctgttc 647

                                                                       
Query: 245 tattcaggaatttttcccctggggcactcacttttgagccactgcttggcttatagcaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 tattcaggaatttttcccctggggcactcacttttgagccactgcttggcttatagcaaa 587

                                                                       
Query: 305 ttattcccaacaactgtatcctatagaacgccttttaaacaccaagccttggctttcaaa 364
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 586 ttattcccaacaactgtatcctatagaacgccttttaaatataaagccttggctttcaaa 527

                                                                       
Query: 365 taataccaatcctagtattttgttattcctcttcattacctgaagttgaaaatatatgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taataccaatcctagtattttgttattcctcttcattacctgaagttgaaaatatatgag 467

            
Query: 425 g 425
           |
Sbjct: 466 g 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)