BAC Information

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BAC

Clone NameMSMg01-144G12
Chromosome2 (Build37)
Map Location 46,871,708 - 46,872,200
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G12.T7 (MSMg01no144_g12.b1)MSMg01-144G12.TJ (MSMg01no144_g12.g1)
ACCAG348485AG348486
length700680
length of high quality
(start - end)
616 (45 - 660)243 (52 - 294)
definitionCHROMAT_FILE: MSMg01no144_g12.b1 PHD_FILE: MSMg01no144_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005CHROMAT_FILE: MSMg01no144_g12.g1 PHD_FILE: MSMg01no144_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCTCCTCCTGAAATTTCTTGAATGAGAATGAATTCTGGTCTTCA
CAAATCCACAGGAATAGTCCACTAGTGCATGATTATAATAATCCATGATT
TTACTCATGTGGAGCTGAAAAACTCTCCCACATGGCCAAGTTTATCTCAG
CAATAGGTGCACTCAGAACCAATTTTCCGTATTAGTTCAAGTTTCCATTT
CTGTGACAAAATACCAGACAAGAGCAAGTTAAAGAAGAAGTTGTCAATTT
TTTATTTTAAATCTGAGGGTACAATATATGGTGGCAGGGAAAGTTGGAGG
CAGGAATGTGAGGCAGCACAGAGAGTTATGAATGATAATGTTCAACTTTC
CTTCTTTATATACACCTCAGAAACCCAGGCCAGAGAATGATGGCATGGAT
ATTTATGGAGGGTCTTTCCTTTTCACTTAAACCCTCATTGGGAACACTTT
CATAGAAGACATATCCAGAGGCAAATTTTCTAGATGATTCTGAATTTACT
TAAATTGACCATGAAAATCTCTCATAGGAACTGATACACTCGGAATATTA
GACCAATTGTGAGATATATTTTTCTTCTGATATTATCCAAAATTGAAATT
CAGTTTTTACATAGACACGATAACACACAGACCAACTTGCTTCTTATGAN

TGGCGGCCGCCTGTTCGCACCGGGGAGGTGAACTATAGAAGGTCAAAAAA
AATTCCCTAGTTAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGC
GTGAAAGGATCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATAG
GGCTGACTTTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGC
GTTTTCATTCCTCTGTTCTGTGTAAGAGTCATTATGCATCCGGTTACCTT
ATTTGTACCTTGCGGGTATGTCACCCAACTTCCTTACTGTCTTCTGNATA
AATTGGTTGATGCTCTATTTGACAAAATACATTCAGATCCTACACCACCT
CTCCTGTGTACATCTGTCTGTCAATTAATCCGACGCTTTGCCCACCCGTG
ACTAGAGACCTGTTCCAAGCAGACAAAGGGGTCCAGAGGGTCTGCGGCAA
GCAATAGCAGATCTATCACCATTTCTTGTTTTCTAACTTCTATAGCAAAG
CTATTAACTTAGTGGAGAGATTTTTGTGAGCCACTTCTTATACAAGACAT
CAAATACGTTAAAATCAATCATTTACTGATAAAATAGCATATAAATATTT
AATAATTTCTATGGCAAGAACAGTGAGATTTATCTACTATATGCGGGCAC
TTGTCAGTTTTCTGACAACCCGCGTTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g12.b1 MSMg01no144_g12.b1 CHROMAT_FILE:
MSMg01no144_g12.b1 PHD_FILE: MSMg01no144_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:14 2005
         (616 letters)



>mm_chr2_46871185_46872200
          Length = 1016

 Score =  930 bits (481), Expect = 0.0
 Identities = 490/493 (99%)
 Strand = Plus / Minus

                                                                        
Query: 124  aaaaactctcccacatggccaagtttatctcagcaataggtgcactcagaaccaattttc 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aaaaactctcccacatggccaagtttatctcagcaataggtgcactcagaaccaattttc 957

                                                                        
Query: 184  cgtattagttcaagtttccatttctgtgacaaaataccagacaagagcaagttaaagaag 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  cgtattagttcaagtttccatttctgtgacaaaataccagacaagagcaagttaaagaag 897

                                                                        
Query: 244  aagttgtcaattttttattttaaatctgagggtacaatatatggtggcagggaaagttgg 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  aagttgtcaattttttattttaaatctgagggtacaatatatggtggcagggaaagttgg 837

                                                                        
Query: 304  aggcaggaatgtgaggcagcacagagagttatgaatgataatgttcaactttccttcttt 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  aggcaggaatgtgaggcagcacagagagttatgaatgataatgttcaactttccttcttt 777

                                                                        
Query: 364  atatacacctcagaaacccaggccagagaatgatggcatggatatttatggagggtcttt 423
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  atatacagttcagaaacccaggccagagaatgatggcatggatatttatggagggtcttt 717

                                                                        
Query: 424  ccttttcacttaaaccctcattgggaacactttcatagaagacatatccagaggcaaatt 483
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 716  ccttttcacttaaaccctcattgggaacactttcatagaagacatatccaaaggcaaatt 657

                                                                        
Query: 484  ttctagatgattctgaatttacttaaattgaccatgaaaatctctcataggaactgatac 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ttctagatgattctgaatttacttaaattgaccatgaaaatctctcataggaactgatac 597

                                                                        
Query: 544  actcggaatattagaccaattgtgagatatatttttcttctgatattatccaaaattgaa 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  actcggaatattagaccaattgtgagatatatttttcttctgatattatccaaaattgaa 537

                         
Query: 604  attcagtttttac 616
            |||||||||||||
Sbjct: 536  attcagtttttac 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)