BAC Information

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BAC

Clone NameMSMg01-144H22
Chromosome2 (Build37)
Map Location 81,162,289 - 81,162,627
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H22.T7 (MSMg01no144_h22.b1)MSMg01-144H22.TJ (MSMg01no144_h22.g1)
ACCAG348553AG348554
length735740
length of high quality
(start - end)		371 (45 - 415)339 (75 - 413)
definitionCHROMAT_FILE: MSMg01no144_h22.b1 PHD_FILE: MSMg01no144_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:20 2005CHROMAT_FILE: MSMg01no144_h22.g1 PHD_FILE: MSMg01no144_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCTTCATCATGTGTCCTTTTATGTGTTTTAGTAGAACATCCTTTCTCC
TGTGTCTGCTTTAGTGAAACATTCCTTTACAAGTCTGTCTTAATTTTTCA
TTTATGTCCTCTTCAATGAAACGTTCCTTCACATGTTTGTTTTTATCAAA
ACACCATCTAACACAACTGAATTTCTAAAGAACCTCTAAGTTTCCAGTTC
ACTTATGCCTAAAAATTATTGCTTTAAGCTTATTATAAGCTTATGGATCT
AAACATTAGATGGTGATTGTTTAGTCAGGTACTAGTCTTAATGGAAAGGC
ATGTGCGTACTTCAGCAGATGTACTTTGTCATTTTATGACATGAACTATT
GTCTTGAAATTATGGAACCCCCCACATTCTTGGAAAACTATGTGAGAAAG
CATATGAATTAAGAACTATAATTAAATGAGGAGTCCTTCATTCAAAATGA
ACATTTTTTTCCTACATGCATGAATAAAGGTTGTTTGGGGCTTACTCTAT
AGGGATTTGTTCTATCTATCAACTATTTGTATGTGTGTGTATGTATGTAT
GGACGTCCTTCCCTCCTCTCCCCTTCCTTTCACTCTTTCTCTTATCCTCA
TCCTTCCTTCATACCTTATCATCTCTTATATTACATATACCCCTACCCCC
ATTTTCCAACTCCATTAACTCCATTTTCATCACTT

NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAAAAACTGACATAAGGGCTATGT
TCATAAAACTGTATATAACTGTAAACATCACAAAACAAAAGTAATACTCT
AGCCTCATGTAAGAGTAAAAAAGAAAACTACAATAACTTCCACTGATATA
AGGCCAAATTGCTCATCTCTTAAACCTACATTCACACAATAACTGCTCTG
TGTTAAATTTCATTCTTCACTTACGCTCAAATGTGCTGACAGTTATACAT
ATTCTAATTGATATTATTTCTAGATATTTTTTAAGAACTCCATATGTCAC
AGTTGTACAGTAAGTATGGCATTCTATACTTGTAATTAGGATTTTTGAAA
AACTGTTGTGATGTGATCCCCCCCCCCCTTGTATATACACAAAAGGAAAG
AAGAGAATGGGACACAAAAGCTATCCCAGCTTTATGGTGAAATAACATGG
CTTTCCTATAAGCAGTTAGCCTTTTCCTGTGTGCACTATGTGCGTGCATA
TACAAGTGAATCCATAGTTCATACATCCTCAGATATCCCATAATATCCTC
TACCATTTTCACCGATCCTTTTTTTTCCTGTTTCACATGCCATCTGTACT
TCTCCCACCCCCCCATTATTCTTCCGCCTTCCCTTCTCATTCTCTTCCCC
TGCTCCACATCACGCTCTCCATTCTTTTTTCTCTTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h22.g1 MSMg01no144_h22.g1 CHROMAT_FILE:
MSMg01no144_h22.g1 PHD_FILE: MSMg01no144_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:21 2005
         (339 letters)



>mm_chr2_81162089_81162827
          Length = 739

 Score =  609 bits (315), Expect = e-179
 Identities = 334/341 (97%), Gaps = 4/341 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaaaactgacataagggctatgttcataaaactgtatataactgtaaacatcacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttaaaaactgacataagggctatgttcataaaactgtatataactgtaaacatcacaaa 480

                                                                       
Query: 61  acaaaagtaatactctagcctcatgtaagagt-aaaaaagaaaactacaataacttccac 119
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 479 acaaaagtaatactctagcctcatgtaagagtaaaaaaagaaaactacaataactaccac 420

                                                                       
Query: 120 tgatataaggccaaattgctcatctcttaaacctacattcacacaataactgctctgtgt 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 419 ggatataaggccaaattgctcatctcttaaacctacattcacacaataactgctc--tgt 362

                                                                       
Query: 180 taaatttcattcttcacttacgctcaaatgtgctgacagttatacatattctaattgata 239
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 361 taaatttcattcttcacttacgctcaaatgtgatgacagttatacatattctaattgata 302

                                                                       
Query: 240 ttatttctagatattttttaagaactccatatgtcacagttgtacagtaagtatggcatt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatttctagatattttttaagaactccatatgtcacagttgtacagtaagtatggcatt 242

                                                    
Query: 300 ctatacttgtaattaggattttt-gaaaaactgttgtgatg 339
           ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 241 ctatacttgtaattaggattttttgaaaaactgttgtgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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