BAC Information

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BAC

Clone NameMSMg01-145B24
Chromosome2 (Build37)
Map Location 136,546,270 - 136,713,391
singlet/doubletdoublet
Overlap geneSnap25, LOC668911, Mkks
Upstream genePlcb4, 6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5
Downstream gene2210009G21Rik, Jag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145B24.T7 (MSMg01no145_b24.b1)MSMg01-145B24.TJ (MSMg01no145_b24.g1)
ACCAG349011AG349012
length694690
length of high quality
(start - end)		350 (75 - 424)612 (79 - 690)
definitionCHROMAT_FILE: MSMg01no145_b24.b1 PHD_FILE: MSMg01no145_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:08 2005CHROMAT_FILE: MSMg01no145_b24.g1 PHD_FILE: MSMg01no145_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,713,043 - 136,713,391)(136,546,270 - 136,546,881)
sequence
NNTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCG
CGGAATTCAACTGCAAATCACTGGCTCACTGGGAGTAGAAGTTTAGTTTT
AATTTGGTGTATGTGTGTTTACACGACTAGAAAAGTCTAACAAAATTTGT
GCCATTTTAGGGGAGATGTCTACAAAGTGTGGGGGGAGGGCAAACCATTC
TTCTCTTTGCCATGCTGGACAGGTTAGGCGTGCACACAGTATGGATTCCT
TTCCTTTAAATCTGTACTTGTACGGCACTATATGCTGCATGATGATTAAG
TCCAGTTAGACATAGCTATTTCTTCAAAGGTTGTTTCTTTAAGAGGAAAA
CTTTAAGAATCTTCTCTTCTAGCCATTTTTTCAGTTGTGCCTGGTGTCTA
CACTAAAGACCAAACTTGGACTGCCCCCCACATTGAAAATAACAACTGTT
TTTATAAGGACAGTATTTTTAAAAGAACTATTCAAGTCAATGATTGGAAT
TTACTACTATCCAACATCAACATTTTCATTAAAGACAAAGTATTAGTTAA
TATCAGACATCCCAAGCACCAGAGCCAGGTCAATTAATTTTAAGAACCTC
GCTGGTATTCTCCTCCTGAGTGGTTTGGCTCTCCCTAATTTTACTCCGAA
GGACCTCTTCTCCCTTGTCCGATTGTTCTCTTTTGGTCGTCCTC

NNNNCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTCCATTGAGAATCTGGGG
CCAAGGTGTTGATATCCTTTGTTTATATTTCTCTTTTTTTTTATTTTACA
GCTTCAGAAAATACTGACTAGGAAATACAAAGCAAACATTTCTTAAATTC
CCTGTAGTTAGTAAACGTTTGCTTGATGGCCAGCCATACTTAAGTCACAC
TGTGACTTTTTTTATTGCTAAGTAGAAAGTAAAGTGAGATAAATGCCAGA
AAGCCTGCTGGGAAGAACATCAGTGAACTGGTTTCATATGAGGGAGTCTT
GTGGAATGATGCCTTTTATTTTAATGAGAAGTCATGAGATCTTTACTAGA
AATCAAAATCATATTCCTGGTTTATGCTTGAGAATTGTTGAACATAATGG
GATTTTCTAACTTGTCCATGAACTTCTCAAACATCATTAGCGTTACTGCA
ACATATTCACTCATTCATTCAGCAAACATTTTCTGAACAAGCTACCAATT
AGCCAGAAAACACTATCCTGGTTCTGCAGACACAGTAGTAAATAAAATAA
ATGTCTCTGCTCTCAGTATGACATGCTAAGCATACCCTATGCCGACAGAA
GTACTTTAGGAAACATGTTTTAAATAGGATCTCTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_b24.b1 MSMg01no145_b24.b1 CHROMAT_FILE:
MSMg01no145_b24.b1 PHD_FILE: MSMg01no145_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:08 2005
         (350 letters)



>mm_chr2_136712988_136713737
          Length = 750

 Score =  659 bits (341), Expect = 0.0
 Identities = 347/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactgggagtagaagtttagttttaatttggtgtatgtgtgtttacacgactagaaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 404 ctcactgggagtagaagtttagttttaatttggtgtatgtgtatttacacgactagaaaa 345

                                                                       
Query: 61  gtctaacaaaatttgtgccattttaggggagatgtctacaaagtgtggggggagggcaaa 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 344 gtctaacaaaatttgtgccattttaggggagatatctacaaagtgtggggggagggcaaa 285

                                                                       
Query: 121 ccattcttctctttgccatgctggacaggttaggcgtgcacacagtatggattcctttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccattcttctctttgccatgctggacaggttaggcgtgcacacagtatggattcctttcc 225

                                                                       
Query: 181 tttaaatctgtacttgtacggcactatatgctgcatgatgattaagtccagttagacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tttaaatctgtacttgtacggcactatatgctgcatgatgattaagtccagttagacata 165

                                                                       
Query: 241 gctatttcttcaaaggttgtttctttaagaggaaaactttaagaatcttctcttctagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gctatttcttcaaaggttgtttctttaagaggaaaactttaagaatcttctcttctagcc 105

                                                            
Query: 301 attttttcagttgtgcctggtgtctacactaaagaccaaacttggactg 349
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 attttttcagttgtgcctggtgtctacactaaagaccaaacttggactg 56


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no145_b24.g1 MSMg01no145_b24.g1 CHROMAT_FILE:
MSMg01no145_b24.g1 PHD_FILE: MSMg01no145_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:08 2005
         (612 letters)



>mm_chr2_136546070_136547081
          Length = 1012

 Score = 1176 bits (608), Expect = 0.0
 Identities = 611/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttccattgagaatctggggccaaggtgttgatatcctttgtttatatttctcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctttccattgagaatctggggccaaggtgttgatatcctttgtttatatttctcttttt 260

                                                                       
Query: 61  ttttattttacagcttcagaaaatactgactaggaaatacaaagcaaacatttcttaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattttacagcttcagaaaatactgactaggaaatacaaagcaaacatttcttaaat 320

                                                                       
Query: 121 tccctgtagttagtaaacgtttgcttgatggccagccatacttaagtcacactgtgactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccctgtagttagtaaacgtttgcttgatggccagccatacttaagtcacactgtgactt 380

                                                                       
Query: 181 tttttattgctaagtagaaagtaaagtgagataaatgccagaaagcctgctgggaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttattgctaagtagaaagtaaagtgagataaatgccagaaagcctgctgggaagaac 440

                                                                       
Query: 241 atcagtgaactggtttcatatgagggagtcttgtggaatgatgccttttattttaatgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagtgaactggtttcatatgagggagtcttgtggaatgatgccttttattttaatgag 500

                                                                       
Query: 301 aagtcatgagatctttactagaaatcaaaatcatattcctggtttatgcttgagaattgt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aagtcatgagatctttactagaaatcaaaatcatattcctggtttatgtttgagaattgt 560

                                                                       
Query: 361 tgaacataatgggattttctaacttgtccatgaacttctcaaacatcattagcgttactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacataatgggattttctaacttgtccatgaacttctcaaacatcattagcgttactg 620

                                                                       
Query: 421 caacatattcactcattcattcagcaaacattttctgaacaagctaccaattagccagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caacatattcactcattcattcagcaaacattttctgaacaagctaccaattagccagaa 680

                                                                       
Query: 481 aacactatcctggttctgcagacacagtagtaaataaaataaatgtctctgctctcagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacactatcctggttctgcagacacagtagtaaataaaataaatgtctctgctctcagta 740

                                                                       
Query: 541 tgacatgctaagcataccctatgccgacagaagtactttaggaaacatgttttaaatagg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgacatgctaagcataccctatgccgacagaagtactttaggaaacatgttttaaatagg 800

                       
Query: 601 atctctttcttt 612
           ||||||||||||
Sbjct: 801 atctctttcttt 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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