BAC Information

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BAC

Clone NameMSMg01-145D05
Chromosome2 (Build37)
Map Location 164,683,003 - 164,683,387
singlet/doubletsinglet
Overlap genePltp
Upstream geneKcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa
Downstream geneF730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145D05.T7 (MSMg01no145_d05.b1)MSMg01-145D05.TJ (MSMg01no145_d05.g1)
ACCAG349064AG349065
length705707
length of high quality
(start - end)
388 (46 - 433)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no145_d05.b1 PHD_FILE: MSMg01no145_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:13 2005CHROMAT_FILE: MSMg01no145_d05.g1 PHD_FILE: MSMg01no145_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCCACAGCAGTCCTTTGGCAAGCCGCTTTCTTCACTTTTCTCGCTCT
TTTAGGAGCGAGTCCCCCACTTGTCCAGACAACAGCTATGCTTGTCACAG
GCTCCGTACTGCCCTATCCACCCTCCCAACTGCCAGCGTCCCGCCCCGTC
CCCTCCCAGCCCCCAAGGAGGAGGGAAGAACCGCGGCGAGGAGGGGGGTC
GGAGGCCCAGACTTATAAAGGCTGCTGGACCCGCGCTACCCGCCAGACCC
CGCCGCCCGGATCCCCCGCGCTGCCTGTCGCCCCACGTGACCGCACTACT
AAGTGAGTTGGGGCGCGTCCCCATCGCATCCCCAGACCCTCGTGAGTTGT
GTGGCTCACTAAATCCAGGCGGGGAGGAGAGCGGATGAAGGAGGGCTCCG
GGATGGGGCACCAGACAGAATGCGTTATAGCGGAGTCTTAGGAGCTAGGG
GAGCCGAGGGACTCAGGGGATAGCGCTCAGTCGGGGCATCCCCGCGTGCG
GGCTGTGAGACCTCCCGCTACTCCTGAGGAATGCGCTTGAGCTCGTCGTC
ATATCAACGCAGAATGCAGTACACGCCCTCCTCTGAAGGAAAAGAGCAAG
TGCTGGTGGGTGACGCCGGGCTGTTCCTCTTTCCTGAATCTTCAACTTTT
CCCCG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGCCAACCTGAGCTACCCAAGACTC
TGTCTCAAAGAATTAAAGGCAGAGTCAGGCGGTGGTGGTGGTGGTGGTGG
TGGTGGCGCACGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGTGGA
TTTCTGAGTTCCAGGACAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCC
AGGGCTATGCAGAGAAACCCTGTCTCGGGGAAAAAAAAAAAGAATTATAG
GCGGGAGCCATTGAAGTAGCTCTTGTTCTTAAGGTACTTGCCTCCAAGCC
TAATGACCTGAATATAATCCCCAGTACACACATGGTGGAAGGAAAGACCC
AACCCCACAGACAGTACTCTGACCTCTACCATGTGCCATGCATGGTTTGT
GTGCCCTTCTGCACACATACACACACTATATGCATGTACAAATATAACGC
TCTTGTTTTAAGATTTATAGTGTGGATAACCCTGCCTACTATACACTGTA
CCTTGCTTCCCATCCTAACATTGTCAATTAATATGATTATGTTTTGGCAT
TACCTTTGACTCCCTGGCATGTTTGCCCCAACCATCTTCACCCCGTTCAC
TTTTCCCCCAGTATTTTTGTATGTTTCGCTTGAATTCCTCTTATCCTTTC
TCCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_d05.b1 MSMg01no145_d05.b1 CHROMAT_FILE:
MSMg01no145_d05.b1 PHD_FILE: MSMg01no145_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:13 2005
         (388 letters)



>mm_chr2_164682800_164683587
          Length = 788

 Score =  698 bits (361), Expect = 0.0
 Identities = 379/385 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacagcagtcctttggcaagccgctttcttcacttttctcgctcttttaggag 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ggaattccacagcagtggtttggcaagccgctttcttcacttttctcgctcttttaggag 529

                                                                       
Query: 64  cgagtcccccacttgtccagacaacagctatgcttgtcacaggctccgtactgccctatc 123
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 528 cgagtcccccacttgtccagacagcagctaggcttgtcacaggctccgtactgccctatc 469

                                                                       
Query: 124 caccctcccaactgccagcgtcccgccccgtcccctcccagcccccaaggaggagggaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 caccctcccaactgccagcgtcccgccccgtcccctcccagcccccaaggaggagggaag 409

                                                                       
Query: 184 aaccgcggcgaggaggggggtcggaggcccagacttataaaggctgctggacccgcgcta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaccgcggcgaggaggggggtcggaggcccagacttataaaggctgctggacccgcgcta 349

                                                                       
Query: 244 cccgccagaccccgccgcccggatcccccgcgctgcctgtcgccccacgtgaccgcacta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 348 cccgccagaccccgccgcccggatcccccgcgctgcctgtcgccccacgtgaccacacta 289

                                                                       
Query: 304 ctaagtgagttggggcgcgtccccatcgcatccccagaccctcgtgagttgtgtggctca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ctaagtgagttggggcgcgtccccatcgcatccccagaccctcgtgagttgtgtggctca 229

                                    
Query: 364 ctaaatccaggcggggaggagagcg 388
           ||||||||||| |||||||||||||
Sbjct: 228 ctaaatccaggtggggaggagagcg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)