BAC Information

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BAC

Clone NameMSMg01-145D06
Chromosome2 (Build37)
Map Location 68,247,801 - 68,248,166
singlet/doubletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145D06.T7 (MSMg01no145_d06.b1)MSMg01-145D06.TJ (MSMg01no145_d06.g1)
ACCAG349066AG349067
length733716
length of high quality
(start - end)
370 (43 - 412)164 (74 - 237)
definitionCHROMAT_FILE: MSMg01no145_d06.b1 PHD_FILE: MSMg01no145_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:13 2005CHROMAT_FILE: MSMg01no145_d06.g1 PHD_FILE: MSMg01no145_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGATCCGCGGAA
TTCCAGCTATGTCCTGAACTCTTAGAGAAGGGCCAGAAGAAACCAGACAT
CAGACTCTGGAGTTAGAAACCACATGACCTCAGGGCAGAGCATACAATGT
GCATGGAGTGTCACACTGAGACCACTGGGACTGCGCAGACCCAACACTGC
AATCAACACTATTAATCATAGATCATCCCCAGGGGAGAAGAAAGGGGTGC
GGCTCATACCCACCCATCCCCATCCCACAAGCCCCAGGCCAGGGAGAGCA
AGCGCCGGGAGTCTCCTCCCCTTATACTCACCAGGAGTTCATCCATACTC
GTCTGGCATTTTTCCAAGTTGATCCGCTTTATGGCTACGCGTTCTTGCCT
GGGTTTGCATAGGCCCCCCCGAACCACCGCAGTTGCTCCGCTGTTAACAA
ACTTTTAAAGAGGAAATCGGCTCTCATATACCGCACCTGATATATTGGGG
CCATGCGCATTCTCCTTTTTTATATGTTGGGGTATTAAAGCCTTTTCCTG
CTAGGCCGTTCCAAATGTTTCCCTGTGTTCTCTTCCTATAATCCCCTGTA
GTCCTTTTACAAATTTACCCCTATTAAAAATGTTGGGGGGTGTGTTGTGT
GGGCCACCCCTCCTTTTTTTATCCCTTTTTCCCCTCTTTCCTTTTTTATC
TTTCTTTACCCTACACCCTCTTTTCCTCCTTCA
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGTCAGGAAGCAACTAGATTAAGT
AGACATAGAAAAGCCTCATGTAGAGACAGAGAATATATATGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTATAATACACTCATCATATATTATATTTTCT
CCATATATATGTGCGTATTATATGGATATAAAAAGAGAGAGAGATTCACT
CTATAAGTTCTGTTGCTCTACAAAACCCTAATACAAGTCCTATTACCTAA
ATTTAATGAATCTTGACATTAATTTATTAACAACGATTTCCACAGAGATA
CTGTCAGAATTAATGATCCACCACCCTATGCATAACATTTTCAGTTGACA
TATGTCCTGACCTACCCACCTCTTCTAGNATAAACAACCTTGCATAATAA
ACTACCTATATACCCTCTTCTCCGACATACAAACGATGTTCTTTATCTTA
CACACCAAAATACATTAACCTCATAACCCACCTCAACATGTTATCTTTAC
AACCATTCCCCCTATATTCCAATCTATTTCATCCACACCAATTCCCTATT
TTTTTAACCATTTTCTTCTCCTTACACACCCCAATTATATCACCCTAAAT
TCATATATACACCCTATTTTCCCCTATTTCCCCCCATTTACCCCTCATCT
AACCTCTTCACCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_d06.b1 MSMg01no145_d06.b1 CHROMAT_FILE:
MSMg01no145_d06.b1 PHD_FILE: MSMg01no145_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:13 2005
         (370 letters)



>mm_chr2_68247596_68248366
          Length = 771

 Score =  646 bits (334), Expect = 0.0
 Identities = 358/366 (97%), Gaps = 1/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattc-cagctatgtcctgaactcttagagaagggccagaagaaaccagacatcagact 64
           |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacagctatgtcatgaactcttagagaagggccagaagaaaccagacatcagact 265

                                                                       
Query: 65  ctggagttagaaaccacatgacctcagggcagagcatacaatgtgcatggagtgtcacac 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 266 ctggagttagaaaccacatgacctcagggcggagcatacaatgtgcatggagtgtcacac 325

                                                                       
Query: 125 tgagaccactgggactgcgcagacccaacactgcaatcaacactattaatcatagatcat 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgagaccactggaactgcgcagacccaacactgcaatcaacactattaatcatagatcat 385

                                                                       
Query: 185 ccccaggggagaagaaaggggtgcggctcatacccacccatccccatcccacaagcccca 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acccaggggagaagaaaggggtgcggctcatacccacccatccccatcccacaagcccca 445

                                                                       
Query: 245 ggccagggagagcaagcgccgggagtctcctccccttatactcaccaggagttcatccat 304
           || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggtcagggagagcaagcgctaggagtctcctccccttatactcaccaggagttcatccat 505

                                                                       
Query: 305 actcgtctggcatttttccaagttgatccgctttatggctacgcgttcttgcctgggttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 actcgtctggcatttttccaagttgatccgctttatggctacgcgttcttgcctgggttt 565

                 
Query: 365 gcatag 370
           ||||||
Sbjct: 566 gcatag 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)