Query= MSMg01no145_d16.b1 MSMg01no145_d16.b1 CHROMAT_FILE:
MSMg01no145_d16.b1 PHD_FILE: MSMg01no145_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:15 2005
(505 letters)
>mm_chr2_171997998_171998902
Length = 905
Score = 833 bits (431), Expect = 0.0
Identities = 488/507 (96%), Gaps = 4/507 (0%)
Strand = Plus / Plus
Query: 1 actgacatctcctgagtgagaa-atttcatcaccctggactcctcagtcgcaggccgcgg 59
|||||||||||||||||||| | |||||||||||||| |||| |||||||||||||||||
Sbjct: 201 actgacatctcctgagtgaggacatttcatcaccctgaactc-tcagtcgcaggccgcgg 259
Query: 60 aacagcagctgttttctctggaagacacatttatctcaccgctgtctgcagtccccggca 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 260 aacagcagctgttttctctggaagacacatttacctcaccgctgtctgcagtccctggca 319
Query: 120 ctccctggttctcctcagccttgaggtcaagtcactctagcaccatgatgacttgtctcg 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 ctccctggttctcctcagccttgaggtcaagtcactctagcaccgtgatgacttgtctcg 379
Query: 180 tcatgatgggaaatcaaactcatagtgacacatctgatgtgtctccctggcttcgaccta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatgatgggaaatcaaactcatagtgacacatctgatgtgtctccctggcttcgaccta 439
Query: 240 caaactcctagctcgacttgcctggtgtagaggacgtggggttgggacctttggtataca 299
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 440 caaactcctagctcgacttgcctggtgtagaggacttgaggttgggacctttggtataca 499
Query: 300 cccttcttgcgaccctccctgaccatggcttgctccatatgcccccaccctaggccccaa 359
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 500 cccttcttgcgaccctccctgaccatggcttgctccatatgcctctattctaggccccaa 559
Query: 360 ctaaccatgtcacacacacacccagagtttacacccacaccctgtcctgaagcatctcct 419
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctaaccatgtcacacacacacacagagtttacacccacaccctgtcctgaagcatctcct 619
Query: 420 gactcactctctctctccaaagatcacccctctcctaaacacaataagcagccacagctt 479
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 620 gactcactctctctctccaaagatcacccctctcctgaacacaataagcagccacaactt 679
Query: 480 ataaatggggtgg-gggggtgtctctg 505
||||| |||| || |||||||||||||
Sbjct: 680 ataaacgggg-ggagggggtgtctctg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_d16.g1 MSMg01no145_d16.g1 CHROMAT_FILE:
MSMg01no145_d16.g1 PHD_FILE: MSMg01no145_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:16 2005
(546 letters)
>mm_chr2_172160409_172161354
Length = 946
Score = 963 bits (498), Expect = 0.0
Identities = 534/546 (97%)
Strand = Plus / Minus
Query: 1 acctgaactctggggaacttcacacttaggcccttccttccatcgagccgtcttcccagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 acctgaactctggggaacttcacacttaggcccttccttccatcgagccgtcttcccagt 687
Query: 61 cctgaatacggactgaattccagactgtcttcatttctctcccgtgcttttgaggaagaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cctggatacggactgaattccagactgtcttcatttctctcccgtgcttttgaggaagaa 627
Query: 121 tcgtggctgtaaacacaagctggccagattttggcttgaccacttcctagtgtggcgctg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 626 tcgtggctgtaaacacaagctggccagattttggcttaaccacttcctagtgtggcgctg 567
Query: 181 ggtacacgcctgctcccctctacttagagtgaacgctgcaggaggcctttgttggacagt 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 ggtacacgcctgctcccctctacttagagtgaacgctgcgggaggcctttgttggacagt 507
Query: 241 gtctctagtgtgttcagcctgggcagaccacagggtaagaatatagacaaggagagttag 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtctctagtatgttcagcctgggcagaccacagggtaagaatatagacaaggagagttag 447
Query: 301 taatgaagctctgggcttcctcccagtttcttccctgtgggccccccctctctgtttcta 360
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 446 taatgaagctctgggcttcctcccagtttcttccctgtgggccttctctctctgtttcta 387
Query: 361 caaatcagatggaagatcagcccaacgcattgaggcaaagggttgttttatggcttcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 caaatcagatggaagatcagcccaacgcattgaggcaaagggttgttttatggcttcagg 327
Query: 421 cttagggatctggttgcctagcgttaatgcacactcaccgtgtgagtaagcattaactca 480
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 326 cttagggatctggttgcctagcgttaacacacactcaccatgtgagtaagcattaactca 267
Query: 481 cacttaccatgtgagtaagcaagcccatccacacctctgactttctctttccttgtctgt 540
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 266 cacttaccatgtgagtgagcaagcccgtccacacctctgactttctctttccttgtctgt 207
Query: 541 agacca 546
||||||
Sbjct: 206 agacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
