Query= MSMg01no145_e04.b1 MSMg01no145_e04.b1 CHROMAT_FILE:
MSMg01no145_e04.b1 PHD_FILE: MSMg01no145_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:18 2005
(513 letters)
>mm_chr2_74460854_74461763
Length = 910
Score = 717 bits (371), Expect = 0.0
Identities = 471/515 (91%), Gaps = 26/515 (5%)
Strand = Plus / Plus
Query: 1 atgcttctccagagaaactcaccacccctccttccccgtgagcatcactgttaagcttgg 60
||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||
Sbjct: 209 atgcttctccagagaaactcaccgcccctccttccccatgagcatcactg---agctggg 265
Query: 61 ggtagacaatctctacccctttagaagtaataattgcacatcatctaaaacaactccctc 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggta-----tctctacccctttagaagtaataattgcacatcatctaaaacaactccctc 320
Query: 121 cacttgttaacacttgctatccctctgccccatggcattctaacccaaatggcttttatg 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cacttgttaacacttgctatccctctgccccatggcattctaacctgaatggcttttatg 380
Query: 181 tgaaaacgatactaaatttcttcccacttggatagtcttaaat-actatgaactaatacc 239
|||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 381 tgaaaatgatactaaatttcttcccacttggatagtcttaaattactattaactaatacc 440
Query: 240 ataggacagaactatacttagctgcttcacgggcaccgcccatgtaaataataccaagaa 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataggacagaactttacttagctgcttcacgggcaccgcccatgtaaataataccaagaa 500
Query: 300 taggtgtgtgtggtttaaagtggtgactccatgtttttacctctcacgagagccattggc 359
|||||||| | || ||||||||| |||||||||| ||| |||| |||||||||||||
Sbjct: 501 taggtgtg----gcttgaagtggtgattccatgttttcaccgctcaggagagccattggc 556
Query: 360 tccttctgctccttccagttttctcatgtaaaaaaagcttagtatagattttctagactc 419
| ||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 557 t---tct------tccagttttctcatgtaaaaag-gcttagtacagattttctagactc 606
Query: 420 aattaatactagtctaaaatcatgttcaaatggtatacacgttaaaaacaaa-acacatg 478
||||||||||||||||||||||||||||||||||||||| || ||||||||| | |||||
Sbjct: 607 aattaatactagtctaaaatcatgttcaaatggtatacatgt-aaaaacaaaga-acatg 664
Query: 479 gcaaaaccattgttccagagttgctaatgaactca 513
|||||||||||||||| ||||||||||||||||||
Sbjct: 665 gcaaaaccattgttcccgagttgctaatgaactca 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 910
Length adjustment: 10
Effective length of query: 503
Effective length of database: 900
Effective search space: 452700
Effective search space used: 452700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_e04.g1 MSMg01no145_e04.g1 CHROMAT_FILE:
MSMg01no145_e04.g1 PHD_FILE: MSMg01no145_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:18 2005
(450 letters)
>mm_chr2_74621407_74622256
Length = 850
Score = 580 bits (300), Expect = e-170
Identities = 309/312 (99%)
Strand = Plus / Minus
Query: 1 tcttcatttttaaattttcataaggaaaggaggccttaggtagtcttaaaagtatgtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcttcatttttaaattttcataaggaaaggaggccttaggtagtcttaaaagtatgtgta 253
Query: 61 atgaaggtgagacatagcactcctgagaggacccccagacacttagagaccctgagaacc 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 atgagggtgagacatagcactcctgagaggacccccagacacttagagaccccgagaacc 193
Query: 121 actaagtggagaaagcaagtgatggggaaatggaagagaaggagaagcagaaggacatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 actaagtggagaaagcaagtgatggggaaatggaagagaaggagaagcagaaggacatgg 133
Query: 181 gcacagtgaagagaggcagaactggagacttggtggtagtgaggaacagcctgatgtgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 gcacagtgaagagaggcagaactggagacttggtggtagtgaggaacagcctgatgtgag 73
Query: 241 aagccagtgatgccacctgagaccatggtgggcgttctgggctgtgctgggtatgtggcc 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 aagccagtggtgccacctgagaccatggtgggcgttctgggctgtgctgggtatgtggcc 13
Query: 301 ctgcagcagcag 312
||||||||||||
Sbjct: 12 ctgcagcagcag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
