BAC Information

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BAC

Clone NameMSMg01-145J14
Chromosome2 (Build37)
Map Location 20,362,199 - 20,362,406
singlet/doubletsinglet
Overlap geneEtl4
Upstream genePtf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564, LOC100041302, LOC433406, LOC654360, LOC667609
Downstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145J14.T7 (MSMg01no145_j14.b1)MSMg01-145J14.TJ (MSMg01no145_j14.g1)
ACCAG349360AG349361
length699732
length of high quality
(start - end)
552 (45 - 596)208 (73 - 280)
definitionCHROMAT_FILE: MSMg01no145_j14.b1 PHD_FILE: MSMg01no145_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005CHROMAT_FILE: MSMg01no145_j14.g1 PHD_FILE: MSMg01no145_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGAGCCGCGG
AATTCTCAACTGAGCATACCAAAAGAGAGAGAGAGAGAAGCACCTGAAAA
AATGTTCAACATTCTTAATCATGAGGGAAATGCAAATCAAAACAACCTTG
AGATTCTACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAGACTCCTCCATTGCT
GGTGGGATTACCAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTC
CTCAGAAAATTGGACATAGTACTACCGGTGGAGCCCACAATACTTCTCCT
GGGCATATACCCAAAATATGTTCCAACTGGTAATAAGAACACATGCTCCA
CTATGTTCATAGCAGCCCCACTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGATACATTTACAC
AATGGAGTACTATTCAGCTATTAAAAACAATGAATTTATTAAATTCTTGG
GCAAATAGATATATCTGGAGGATATCATCCTTAGTGAGGTAATCCAATCA
CAAAAGAAATCACTAGATATGCACTCACTGATAAGTGGATATTAGCCCAG
AAACTTAGAATACCCCAGATTCAAAACACAAGAAAATCAGGAAGAAGGA
NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGGTAATACTGAGGACTCATCAGCTA
ACCCTGCCAGGCTGTAGTGTACTGAGTGAGGGTTGAGAAGAAATCAACAC
ACACTTTCCTGGAAAAGCGTTATCTGCCAGAAAGACACGCAGAGAATCTC
TGTGGTAAAGCATATCCCATTCGCAGTCTAGAATTCCCTCTGTGTTGAAT
GAGGTGGTGTGTGAATAGATAGGAGGTTTTNNTNTTTTTTTTTTTTTTTT
TCTNNNNTTTTTTTTTTTTTTTTTTTTNNTTTNNTCTTTNTTTTTTTTTT
NTTTTTTTTTTTTTTCCCCCCCCCTTTCCTTTCCCCTTCCTTTTCTTTTT
TTTTTTTTTTTTTTCCCCCCCCCCTTTTTNNNTNNGTTTTGGTTTCTCCT
CTTTCTTCCTTCCTCTCCTTCTCCGCCGCGCCCGTGGCCCTCCTTCCGTT
TCCCCCCTGCCTCTGTTCCCTCTTTCCTCGTTTGCCTTTTTCCCTTTTCT
TCTTCCTTTCTCCCTTCTCTCCTTTTCTTCCCCTTGTCGTTCCCTTCTTT
CGGTTTTGTTCTCGCTTATCCGCCCCTTCTTGCTCCGCCTTTTTTTATCC
CCCTTTCCCCTTTTCTGGTCTTCTTTGCCTTTCCTATCCCTTCTTTCTTT
ATCCTCCTCCTTCCTATATCTTTCTTGTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_j14.g1 MSMg01no145_j14.g1 CHROMAT_FILE:
MSMg01no145_j14.g1 PHD_FILE: MSMg01no145_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:44 2005
         (208 letters)



>mm_chr2_20361999_20362606
          Length = 608

 Score =  395 bits (204), Expect = e-114
 Identities = 207/208 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggtaatactgaggactcatcagctaaccctgccaggctgtagtgtactgagtgaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agaggtaatactgaggactcatcagctaaccctgccaggctgtagtgtactgagtgaggg 349

                                                                       
Query: 61  ttgagaagaaatcaacacacactttcctggaaaagcgttatctgccagaaagacacgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttgagaagaaatcaacacacactttcctggaaaagcgttatctgccagaaagacacgcag 289

                                                                       
Query: 121 agaatctctgtggtaaagcatatcccattcgcagtctagaattccctctgtgttgaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agaatctctgtggtaaagcatatcccattcgcagtctagaattccctctgtgttgaatga 229

                                       
Query: 181 ggtggtgtgtgaatagataggaggtttt 208
           |||||| |||||||||||||||||||||
Sbjct: 228 ggtggtatgtgaatagataggaggtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)