Query= MSMg01no145_p09.b1 MSMg01no145_p09.b1 CHROMAT_FILE:
MSMg01no145_p09.b1 PHD_FILE: MSMg01no145_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:12 2005
(582 letters)
>mm_chr2_86118456_86119435
Length = 980
Score = 733 bits (379), Expect = 0.0
Identities = 530/587 (90%), Gaps = 17/587 (2%)
Strand = Plus / Minus
Query: 5 gaattctttaagtgtaccaaacaaggttgttctattgagaattaaggatccatggagcag 64
|||||||| ||||| |||||| |||||||||||||||| |||||| ||||||||| ||||
Sbjct: 672 gaattcttcaagtggaccaaagaaggttgttctattgataattaaagatccatggggcag 613
Query: 65 taa--------ttttttagagttaggagtcataaaatagccaaatatgctacatttaatt 116
|| |||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct: 612 -aagggtttttttttttagagttagaagtcataaaatagccaaatatattacatctaatt 554
Query: 117 tattgatgggaaatcatggtaatatttaaaattttgaatgacagaagagtttaggaatag 176
||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 tattggtggaaaatcatggtgatatttaaaattttgaatgacagaagaatttaggaatag 494
Query: 177 gtaaatgttttaccaaaatcttacctttaaaaaattaacatgaattagatttgcagataa 236
||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 gtaaatg-tataccaaaatcttaccttt-aaaaattaacatgaattagatttgcagataa 436
Query: 237 aatatggcatcctcaatcatgttagatttcaagataaagatgtctaaattttaacatata 296
||||||| | |||| ||||| |||||||||||||||| || ||||| ||||||||||||
Sbjct: 435 aatatggggttctcagtcatggtagatttcaagataaacatctctaagttttaacatata 376
Query: 297 ttctatgcaaactctaatttattttttacaataaatgcttgccatgcaatgtttgaagaa 356
| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 tgctatgcaatctctaatttatttcttacaataaatgcttgccatgcaatgtttgaagaa 316
Query: 357 taaatattttaaatgtttcttatgcaatcttttaaaaagctcagtggcttttatataatg 416
||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 315 taaatattttaaacatttcttatgcactctttttaaaagctcagtggcttttatataatg 256
Query: 417 ttattaatatattattaagattttttttattgtctgattaattttcttagaaggattctc 476
|||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 255 ttattaatgtatttttaa----ttttttattgtctgattaattttcttagaaggtttctc 200
Query: 477 attaatggattattttatattgaatagtcattacataattacaggcacagaactgt-tta 535
|| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct: 199 atcaatggattattttatattgaatagtcattacataattacaagcacagaaatgtgtta 140
Query: 536 cagagttgtagaatttaaatagatttctacaatgagatcacttctta 582
|| || | ||||||||||||||||||||| ||||||||||| |||||
Sbjct: 139 ca-aggtatagaatttaaatagatttctataatgagatcacctctta 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 980
Length adjustment: 10
Effective length of query: 572
Effective length of database: 970
Effective search space: 554840
Effective search space used: 554840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_p09.g1 MSMg01no145_p09.g1 CHROMAT_FILE:
MSMg01no145_p09.g1 PHD_FILE: MSMg01no145_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:12 2005
(572 letters)
>mm_chr2_85958355_85959327
Length = 973
Score = 1091 bits (564), Expect = 0.0
Identities = 570/572 (99%), Gaps = 1/572 (0%)
Strand = Plus / Plus
Query: 1 actctgtgatgaatggaggagatacttgtgatcagacaagatgcttgaaatcatcttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtgatgaatggaggagatacttgtgatcagacaagatgcttgaaatcatcttatg 260
Query: 61 agcatcatggtttttcattaaaatgctggtaaccatatttacaaagcaaatgattttaat 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatcatggtttttcattaaaatgctggtaaccatatttacaaagcaaatgattttaat 320
Query: 121 ctttggtctttgcttctattagcagttggaaataaaataaactatctttttgtttttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttggtctttgcttctattagcagttggaaataaaataaactatctttttgtttttctt 380
Query: 181 tcttttttacaaaagaaatcatcaaggcagcaaatcatcaaggcagcaaatctaagagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttttttacaaaagaaatcatcaaggcagcaaatcatcaaggcagcaaatctaagagct 440
Query: 241 ataactagagtcatacaccaccatatctgaaaacttttagtacttgaatatggatttaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataactagagtcatacaccaccatatctgaaaacttttagtacttgaatatggatttaaa 500
Query: 301 ttttaggtttttgaaatctacagtgaaataatcaattgaactattaccatttactggaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaggtttttgaaatctacagtgaaataatcaattgaactattaccatttactggaag 560
Query: 361 actgtatttagtactaataaaggcttcagagaaataagtctcaacctggggctttccaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actgtatttagtactaataaaggcttcagagaaataagtctcaacctggggctttccaac 620
Query: 421 gtcttttatgtccactaatatgatatgtatgtgtttgccttatgtgtagagctagtgaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcttttatgtccactaatatgatatgtatgtgtttgccttatgtgtagagctagtgaga 680
Query: 481 gttggagtagggattgaggctgaggacctgtgatatatagtatacataacttgtagctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttggagtagggattgaggctgaggacctgtgatatatagtatacataacttgtagctca 740
Query: 541 gttgctatgccttgatgagaagaaa-ggaaga 571
||||||||||||||||||||||||| ||||||
Sbjct: 741 gttgctatgccttgatgagaagaaaaggaaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
