BAC Information

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BAC

Clone NameMSMg01-146A10
Chromosome2 (Build37)
Map Location 56,217,328 - 56,218,025
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146A10.T7 (MSMg01no146_a10.b1)MSMg01-146A10.TJ (MSMg01no146_a10.g1)
ACCAG349672AG349673
length1,2661,230
length of high quality
(start - end)		468 (143 - 610)757 (127 - 883)
definitionCHROMAT_FILE: MSMg01no146_a10.b1 PHD_FILE: MSMg01no146_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:18 2005CHROMAT_FILE: MSMg01no146_a10.g1 PHD_FILE: MSMg01no146_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCTTCNTANATACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCCCCTGTGCCCATCCCTTTAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCACCGTCTCTGGTTTTATGCCCCCGGCCCTTAATCC
ACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCCCATT
CTTCTGCATGATAACCACCATTTGTTCCAGAACCATTTGTTGAAAATGCT
GTCTTTTTTCAACGGATGATTTTAGTTCCCATGTCAAAGATCAAGTGAAC
ATAGGTGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
TTTGTCTGTCTCTATATCAGTACCATGAAGCTTTTATCACAATTGCTCTG
TAGTATAGTTTTAGGTCAGGCTTTAGGTTAGGTCCTTGAGGAGAGTTTTT
GCTATCCTAGGTTTTCTGTTATTCCAGATGACTTTGCAGATTGCCTTTTC
TAATTCCTTGAAGAATTAAGTTGGAATTTTGATGGGGATTGCATTGAATC
TGTGGATTACCTTTGGCAAGATATCCATTTTTACTACATTGATCCTGCCC
ATCCATGAGCATGGGATCTTATTCTCCTTTCTGAGATTTTCAATTTCTTT
CTTCAGAGACTTGAAGTTTTTATCATACAGATCTTTCACTTCCTTAGTTA
GAGTCATGCCAAGGTATTATATATTGTTTGTGACTATTGAGATATTCGTT
TCTTTTTTTTTTTTCTTTCTTTTCTTTTTTTTTTTTTTCTTTTTTATTTT
TTTTTTTTTTCTTTTTTTTTATCCTTTTTTTTTTTTTATTTTATTTTTTT
TATTCCTTTTTTTATTTATTTATTATTTTATTTTAATCTACTATTTAATT
TATATTTTTTCTTCTCATTTTTTTCCTTCTTCTATTTTTCTTTTTTTTAT
TTTATCTTCATTCTTATTATCATTCTATATCTTTTTTATTTTTCTATATC
TTTTTTAATTTATTTCCTTTAACCTTATCTCCTATATTATCTTTCTTCCT
TTTCTTTTTTTTCGTATTATTTTATTACTTTTCATTTATCTTTTCTCGCT
TTACTCTTATATTTCTTTCTCTTATTGTCTTTATCTCTTCTCTCCTTTTG
CATTCAATATACATCCTTTTCTTCTTTATTCCTTTCTCTCATCTTTACTA
TTTCTTATATTTCTATCCTTTTATTTCTATCTTTATTTTATTTTTATCTT
TCTTATTGATTANTCT

NCCTTTCCTTTTTTTAAGAGGGTGAGCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGAGCCGATTTTTTGNG
AGACATAACAGCGGAATGCCTTTAACACACGTTCCGCGCTACCCTAGGGC
TACAGTTTTGATCACAAGCTGAGTGGATTCATTGTCAACAGAGAAAATTT
CATACTCATGTCAGTGGTAAATTTTACAATGCTTTTTCCTTTTAAGTACA
AATGAAGGAAGGATAAATCCAGTAGTGAACTATTTTAGCTACAATCTATG
AAAATAATTGCAACAAGTAGGAACAGAAGTCAAACCTGGCTTGTTCAAGT
CTAGCTATGCAGTTATATATATTTATTAATTAATAGTATTACCCTTGACA
TATATACACTTAAACAGGAATCCATTTTATTGAAAATAATACATTGTCAT
TATTTGAAAATCTGAACAAATGAGTTCTGGATTTATCAACTCTTCCATAA
TATTAGTAAGGAAGTTGTTTTTTGTTTCTAAGCCATATAAATGGTGCAAC
TCATTATTTATCATCTTTTAGTCATAAAATATTTTAAGTCCCTGTTTCAT
TCTATCCAAGTACTAGACATTCGTAAGACAGTTGCTTTGGATTTCTTTAA
AAAGATACATTCTTATCATAATTTCCGAGGAAGGTTAAATATAAATTAGT
TATAAAGCCAATAAGAAGATAAATGATTAGGCTCTGTGATTATTTCTAAA
TTTATAGTGTTTTAGCACTACTAGTGTTTAATTAAGGAGAAAGGGAGCCA
ATTTTATTTCATGTAATTATTTAAGACCTCAAAAATTAATGTTCTGCTCC
CTCTGTAATGCTGTAGTTCTAAAGCAAAGCTGAGGACAACAAAGTCCTAT
TTGATAGTCCAGCCTTTCAGCCAACAGTTCTTCTTCCTGGTTTTGATGTG
GGAAAGGTTTTATTTATTCAATTATTAATCCAAGTTTTGGCCGGCCTTCT
TTTTTTTTTTGTTAAAACTTAAAAAAGAAATTTCTCCTGGCCTATTTTCT
AAATAAAAAGTTTAAATTTACCGGATAAATATTTATTTTTTACTTGTGCG
TTATTGGGCCTGTTCTTTATTCTTTAAAATTACTGGCGGCCCCCCTGGTG
ACTTATATTAATAAAGGGGCGGTGGAGAGGGATGATATCTTTTCTCTTTC
TCTTCTTTTCTCTCATCTCCTTTCTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_a10.g1 MSMg01no146_a10.g1 CHROMAT_FILE:
MSMg01no146_a10.g1 PHD_FILE: MSMg01no146_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:19 2005
         (757 letters)



>mm_chr2_56216869_56218025
          Length = 1157

 Score = 1342 bits (694), Expect = 0.0
 Identities = 697/698 (99%)
 Strand = Plus / Minus

                                                                        
Query: 60   caacagagaaaatttcatactcatgtcagtggtaaattttacaatgctttttccttttaa 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 caacagagaaaatttcatactcatgtcagtggtaaattttacaatgctttttccttttaa 1098

                                                                        
Query: 120  gtacaaatgaaggaaggataaatccagtagtgaactattttagctacaatctatgaaaat 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 gtacaaatgaaggaaggataaatccagtagtgaactattttagctacaatctatgaaaat 1038

                                                                        
Query: 180  aattgcaacaagtaggaacagaagtcaaacctggcttgttcaagtctagctatgcagtta 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 aattgcaacaagtaggaacagaagtcaaacctggcttgttcaagtctagctatgcagtta 978

                                                                        
Query: 240  tatatatttattaattaatagtattacccttgacatatatacacttaaacaggaatccat 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  tatatatttattaattaatagtattacccttgacatatatacacttaaacaggaatccat 918

                                                                        
Query: 300  tttattgaaaataatacattgtcattatttgaaaatctgaacaaatgagttctggattta 359
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 917  tttattgaaaataatacattgtcattaattgaaaatctgaacaaatgagttctggattta 858

                                                                        
Query: 360  tcaactcttccataatattagtaaggaagttgttttttgtttctaagccatataaatggt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  tcaactcttccataatattagtaaggaagttgttttttgtttctaagccatataaatggt 798

                                                                        
Query: 420  gcaactcattatttatcatcttttagtcataaaatattttaagtccctgtttcattctat 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797  gcaactcattatttatcatcttttagtcataaaatattttaagtccctgtttcattctat 738

                                                                        
Query: 480  ccaagtactagacattcgtaagacagttgctttggatttctttaaaaagatacattctta 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  ccaagtactagacattcgtaagacagttgctttggatttctttaaaaagatacattctta 678

                                                                        
Query: 540  tcataatttccgaggaaggttaaatataaattagttataaagccaataagaagataaatg 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  tcataatttccgaggaaggttaaatataaattagttataaagccaataagaagataaatg 618

                                                                        
Query: 600  attaggctctgtgattatttctaaatttatagtgttttagcactactagtgtttaattaa 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617  attaggctctgtgattatttctaaatttatagtgttttagcactactagtgtttaattaa 558

                                                                        
Query: 660  ggagaaagggagccaattttatttcatgtaattatttaagacctcaaaaattaatgttct 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  ggagaaagggagccaattttatttcatgtaattatttaagacctcaaaaattaatgttct 498

                                                  
Query: 720  gctccctctgtaatgctgtagttctaaagcaaagctga 757
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 497  gctccctctgtaatgctgtagttctaaagcaaagctga 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1157
Length adjustment: 10
Effective length of query: 747
Effective length of database: 1147
Effective search space:   856809
Effective search space used:   856809
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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