BAC Information

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BAC

Clone NameMSMg01-146C02
Chromosome2 (Build37)
Map Location 147,354,509 - 147,488,720
singlet/doubletdoublet
Overlap geneLOC640914
Upstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
Downstream geneA530006G24Rik, LOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146C02.T7 (MSMg01no146_c02.b1)MSMg01-146C02.TJ (MSMg01no146_c02.g1)
ACCAG349751AG349752
length1,2071,215
length of high quality
(start - end)		723 (89 - 811)727 (92 - 818)
definitionCHROMAT_FILE: MSMg01no146_c02.b1 PHD_FILE: MSMg01no146_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:32 2005CHROMAT_FILE: MSMg01no146_c02.g1 PHD_FILE: MSMg01no146_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,487,998 - 147,488,720)(147,354,509 - 147,355,235)
sequence
NCCAGACCTTNNNNAGCAATGGGCGCTATAGACTCCTAAGGGAGAGGATC
CGCGGAATTCGGTGCAGAGTTCAGGCCGTGTAAAATGCCAGTGTGCTTTC
CTTAGTCAGGAGGAAGCTGTCACGGTCACATCACCACCAGGAGAAAACAA
GTGATCATTTCATAGGAACTCTTCAGAGTCTTCAAAGAACTTCTAGAAAC
ACAAAATTATTCTTTAGAAAGATTATTTGAATTTCTAGGATACTAAACCA
AACAAAATTAAAATACTTTTCCATGTCCTGTCTCCCCACTCAGCACACAC
TGCTTAATGTTCCCACCAGCAGGCATGCTTGGCCAGTTCTGTTCTCCTCA
GCCCTTGCACCATACTCAATGTTTGCCTGTTTCTCTTGCTTCACCCTGAG
AGCTTTCTGTAGGTCCTTCAGAATTCAACCAGGATCACTAAGGATGGTGT
TCCCATCTATTGCTTCCAAGATCCATGTATCATACACCATACACTCTTGT
CCACTTCATAGTTTAATATAAATATTTTCATTAGAGTGATATACTTATGA
CCATTTAACTTAAAAGTATAACTTCTCCAAGTTCCTCTTTATTCTGTTTC
CTTTATTTTTTATGTCACACATATAAGTTCATGTAACACACATATGCACA
TGGTATTGTTGTTGTTATCGATTGTTTCCATTCATTTCAACTGGAGATGT
TTTCATGGTTTAATCACTAATGTGTCCTTCATACCTAAAAACATAGGTCA
CATAATAATAATTCAATGAATGTTTATTGAGTAAAACTAGTCCTGTGGGA
ATGGGTGTTGCTTAACAGGAGGCCAACAAAATGGTACCAATCTGACTTTG
GTGTATAGCAGTGAGGACGAAATAAACTAGACAGTTCCTGGATGTATTCA
GAAATGAGATGCAACCAGGAAATGGAATTAGCGAAGAATGGGGTGTAAGA
CTTTTTTGAGAAAAGATGATGAAAGGATAAATTTTACATTTCTGAAGAAG
GGTAGCCCCTTTTAAAGAATCCTTAAAAATTTCTCGGTAAGGCTTTTGAG
AACAGTAAACCCGAAAATTTTTTTTAATAATGGGGTTTCGAAATCTTTTC
TCCCTGTTTTTCTAAATGTGTCTTTATTTTATTTAAAAATGTGGTTTCTA
AATAAAGGGTTCTTTGCACCTTCTTTCTGTATCAATGGGTCTCTCCTTTA
TATCTAT

NCCTTTTCTTTTTTTTAACAAGGNTAGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTATAGGCGAAACAATGT
AATTTTTCAAAATCAAATTCCATCATAATTATGTGATGCCCTGTCATTTG
GAAGGAAAGTCAAGACGCGAAATGAAGTATCAAAAATTTGCTTGTTCATT
TGATTAGTTGCTTGTACAGATGGAAGAATGCTAATGCTTAAATTCAAGAT
GTGATTGAAATCCCTGTGCCAGGGGACTAATGGCTAGGGAGGAAGAGGAA
ATATGGGAAAGGTCTATGTGGGAACAAGAAGTTAGTATGTACCCTCTCTC
TTGACTGGTATTGCTAAGGAGCCCTGGTGAAACCACACATGTCTTTCTAG
ATGGGAGCTCTCAGTGGATAAAGTCCACATGAGCTTCAGACGTGGGCCAG
GTGCCTTTGGGAGGCTGGTAGAGGTAGAGACCCTGAGCTTCTCCTCTGGT
TGTCTTGGCAAAGAGCATACAAACTGGCTGAGGTACCTACCAGCCTCACA
GACTTCTGGAAACAAACACTGACCTGCTTACACAATTTCTGAAAAATCCC
ACATCTGACAGAGAGCTGGGACAGCTGCCTCCCAGGTGGTCTTGCCAGGA
CAAACACTGAAGGACCTCAGTGCCAGCAGAACCTAGCTGGCAAAGACTCA
CAGAGGCCGTGTGGCAGCCCATGGGGCCTGCTCTGGACAAACAGTGCAAT
GCTGACACATGTATCGAACCTGCAATCAATACATCATCTGTGACAACAAA
CCAGCTGGGAAAGGCATTGGCTCAGTGTTCTGTTTAAACTTATGACTTAA
AGAAGAGTTTGATGGTTAGGTGACTTTAGTGAAAGAATTAAAATATCTGG
GGGAAAATGAAACAGGCACAATAAAATTTAAAATGTGGCTTTCTCTTTTC
AAAAACCCATTTTCCACTGTTATCTCCCAAAAAAAAATTATGAACATTGT
TGGAATGGATGAAGTTATCCTTGCTTTCTTTTGGAATTTTTATGGTTCAA
AAGAAAATTTTCTCTTGTTTGATTTTTTTAAAAAATAAATCCTTTTGTTT
TTTTTATTTTGTTGAAAAAATATTTTGAATAATAATACTGTTATATATCT
CTTTTGTTTTTGTTTTTCCCTTTTTTTTATTGACAATAATGTCTTTATAA
TTATATTTATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_c02.b1 MSMg01no146_c02.b1 CHROMAT_FILE:
MSMg01no146_c02.b1 PHD_FILE: MSMg01no146_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:32 2005
         (723 letters)



>mm_chr2_147487798_147488920
          Length = 1123

 Score = 1359 bits (703), Expect = 0.0
 Identities = 718/723 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtgctttccttagtcaggaggaagctgtcacggtcacatcaccaccaggagaaaac 60
           |||||||||||||||||||||||||||| || |||||||||||||  | |||||||||||
Sbjct: 923 cagtgtgctttccttagtcaggaggaaggtgccacggtcacatcaagagcaggagaaaac 864

                                                                       
Query: 61  aagtgatcatttcataggaactcttcagagtcttcaaagaacttctagaaacacaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 aagtgatcatttcataggaactcttcagagtcttcaaagaacttctagaaacacaaaatt 804

                                                                       
Query: 121 attctttagaaagattatttgaatttctaggatactaaaccaaacaaaattaaaatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attctttagaaagattatttgaatttctaggatactaaaccaaacaaaattaaaatactt 744

                                                                       
Query: 181 ttccatgtcctgtctccccactcagcacacactgcttaatgttcccaccagcaggcatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttccatgtcctgtctccccactcagcacacactgcttaatgttcccaccagcaggcatgc 684

                                                                       
Query: 241 ttggccagttctgttctcctcagcccttgcaccatactcaatgtttgcctgtttctcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttggccagttctgttctcctcagcccttgcaccatactcaatgtttgcctgtttctcttg 624

                                                                       
Query: 301 cttcaccctgagagctttctgtaggtccttcagaattcaaccaggatcactaaggatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttcaccctgagagctttctgtaggtccttcagaattcaaccaggatcactaaggatggt 564

                                                                       
Query: 361 gttcccatctattgcttccaagatccatgtatcatacaccatacactcttgtccacttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttcccatctattgcttccaagatccatgtatcatacaccatacactcttgtccacttca 504

                                                                       
Query: 421 tagtttaatataaatattttcattagagtgatatacttatgaccatttaacttaaaagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagtttaatataaatattttcattagagtgatatacttatgaccatttaacttaaaagta 444

                                                                       
Query: 481 taacttctccaagttcctctttattctgtttcctttattttttatgtcacacatataagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taacttctccaagttcctctttattctgtttcctttattttttatgtcacacatataagt 384

                                                                       
Query: 541 tcatgtaacacacatatgcacatggtattgttgttgttatcgattgtttccattcatttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcatgtaacacacatatgcacatggtattgttgttgttatcgattgtttccattcatttc 324

                                                                       
Query: 601 aactggagatgttttcatggtttaatcactaatgtgtccttcatacctaaaaacataggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aactggagatgttttcatggtttaatcactaatgtgtccttcatacctaaaaacataggt 264

                                                                       
Query: 661 cacataataataattcaatgaatgtttattgagtaaaactagtcctgtgggaatgggtgt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacataataataattcaatgaatgtttattgagtaaaactagtcctgtgggaatgggtgt 204

              
Query: 721 tgc 723
           |||
Sbjct: 203 tgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space:   793569
Effective search space used:   793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_c02.g1 MSMg01no146_c02.g1 CHROMAT_FILE:
MSMg01no146_c02.g1 PHD_FILE: MSMg01no146_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:32 2005
         (727 letters)



>mm_chr2_147354309_147355435
          Length = 1127

 Score = 1390 bits (719), Expect = 0.0
 Identities = 725/727 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaatgtaatttttcaaaatcaaattccatcataattatgtgatgccctgtcatttgg 60
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 201 aaacaatgtaatttttcaaaatcaaattcaagcataattatgtgatgccctgtcatttgg 260

                                                                       
Query: 61  aaggaaagtcaagacgcgaaatgaagtatcaaaaatttgcttgttcatttgattagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggaaagtcaagacgcgaaatgaagtatcaaaaatttgcttgttcatttgattagttgc 320

                                                                       
Query: 121 ttgtacagatggaagaatgctaatgcttaaattcaagatgtgattgaaatccctgtgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtacagatggaagaatgctaatgcttaaattcaagatgtgattgaaatccctgtgcca 380

                                                                       
Query: 181 ggggactaatggctagggaggaagaggaaatatgggaaaggtctatgtgggaacaagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggactaatggctagggaggaagaggaaatatgggaaaggtctatgtgggaacaagaag 440

                                                                       
Query: 241 ttagtatgtaccctctctcttgactggtattgctaaggagccctggtgaaaccacacatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtatgtaccctctctcttgactggtattgctaaggagccctggtgaaaccacacatg 500

                                                                       
Query: 301 tctttctagatgggagctctcagtggataaagtccacatgagcttcagacgtgggccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttctagatgggagctctcagtggataaagtccacatgagcttcagacgtgggccagg 560

                                                                       
Query: 361 tgcctttgggaggctggtagaggtagagaccctgagcttctcctctggttgtcttggcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcctttgggaggctggtagaggtagagaccctgagcttctcctctggttgtcttggcaa 620

                                                                       
Query: 421 agagcatacaaactggctgaggtacctaccagcctcacagacttctggaaacaaacactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagcatacaaactggctgaggtacctaccagcctcacagacttctggaaacaaacactg 680

                                                                       
Query: 481 acctgcttacacaatttctgaaaaatcccacatctgacagagagctgggacagctgcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctgcttacacaatttctgaaaaatcccacatctgacagagagctgggacagctgcctc 740

                                                                       
Query: 541 ccaggtggtcttgccaggacaaacactgaaggacctcagtgccagcagaacctagctggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaggtggtcttgccaggacaaacactgaaggacctcagtgccagcagaacctagctggc 800

                                                                       
Query: 601 aaagactcacagaggccgtgtggcagcccatggggcctgctctggacaaacagtgcaatg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagactcacagaggccgtgtggcagcccatggggcctgctctggacaaacagtgcaatg 860

                                                                       
Query: 661 ctgacacatgtatcgaacctgcaatcaatacatcatctgtgacaacaaaccagctgggaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctgacacatgtatcgaacctgcaatcaatacatcatctgtgacaacaaaccagctgggaa 920

                  
Query: 721 aggcatt 727
           |||||||
Sbjct: 921 aggcatt 927


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1127
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1117
Effective search space:   800889
Effective search space used:   800889
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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