Query= MSMg01no146_e04.b1 MSMg01no146_e04.b1 CHROMAT_FILE:
MSMg01no146_e04.b1 PHD_FILE: MSMg01no146_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:49 2005
(676 letters)
>mm_chr2_45163251_45164325
Length = 1075
Score = 1106 bits (572), Expect = 0.0
Identities = 644/670 (96%), Gaps = 7/670 (1%)
Strand = Plus / Plus
Query: 1 cattccttctgctcccatttctc---aacctgttctctgagtctcaccccagtagtataa 57
||||||||||||||||||||||| || ||||||| |||||||| |||||||||||
Sbjct: 201 cattccttctgctcccatttctctaaaa--tgttctcagagtctcaggacagtagtataa 258
Query: 58 tgagaggagatactcagctttctctccttctcagcaccttgaacaggggtctctgtcttc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgagaggagatactcagctttctctccttctcagcaccttgaacaggggtctctgtcttc 318
Query: 118 actgtcactcatagtaaagaatgatcaaagctgggggtagcagggctccactccagaatt 177
||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct: 319 actgtcactcatagtaaagaatgattaaagctgggg-tagcatggctccactccagaatt 377
Query: 178 cccaaacaaccgcataaagactgccctttaaggcctaagtccttctcagtcatgggcttt 237
|| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 378 cc-aaacaaccgcataaagactgccctttcaggcttaagtccttctcagtcatgggcttt 436
Query: 238 aagagtttgttgtatgtgttcattttacatgatattacgagtgaccctttcatggaagta 297
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 aagagtttgttgtatgtgttcattttacatgatattacgagtgaccctttcacggaagta 496
Query: 298 tacgttttctgtgaagtatgttctctcccacacttcccactaaccattgtccttcttctc 357
||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 497 tacattttctgtgaagtacgttctctcccatacttcccactaaccattgtcctttttctc 556
Query: 358 tttccagcactccctcttgattctctaggcagttttgcttctgctttcatgccatataga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttccagcactccctcttgattctctaggcagttttgcttctgctttcatgccatataga 616
Query: 418 tatatgcatgtattcatagttttgtgtatcaataaaatgtaaccatgcatgagatataac 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 617 tatatgcatgtattcatagttttgtgtatcaataaaatgtaactatgcatgagatataac 676
Query: 478 atgatatctatctttctgagataggcttgatacatgcattattattatcttgagttacat 537
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 677 atgatatctatctttctgagataggcttgatacatgcattattattgtcttgagttaaat 736
Query: 538 gtacttttctgcaaataaccaaatgtggctaagttttcattgcgtatgaacactacattt 597
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 737 gtacttttctgcaaataaccaaatgtggctacgttttcattgcggatgaacactacattt 796
Query: 598 tctttagccatccttctgtggttgggcaccgggatgggtcccatcttgatggtgagcagc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tctttagccatccttctgtggttgggcaccgggatgggtcccatcttgatggtgagcagc 856
Query: 658 actgaaataa 667
| ||||||||
Sbjct: 857 agtgaaataa 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1075
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1065
Effective search space: 709290
Effective search space used: 709290
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_e04.g1 MSMg01no146_e04.g1 CHROMAT_FILE:
MSMg01no146_e04.g1 PHD_FILE: MSMg01no146_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:49 2005
(783 letters)
>mm_chr2_45306450_45307632
Length = 1183
Score = 1498 bits (775), Expect = 0.0
Identities = 781/783 (99%)
Strand = Plus / Minus
Query: 1 gaaaaatgcaatataatcaaaatatacacccttattcactattgatatatcacatgatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 gaaaaatgcaatataatcaaaatatacacccttattcactattgatatatcacatgatga 924
Query: 61 ataaacattatcaactatttgtgcattcacatgtgtagttagaatggagcaaggcagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 ataaacattatcaactatttgtgcattcacatgtgtagttagaatggagcaaggcagagg 864
Query: 121 cagagacttatttctgctaattcctgaaactagttggcaaatatacatcccacaatatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cagagacttatttctgctaattcctgaaactagttggcaaatatacatcccacaatatga 804
Query: 181 atacgctgcatggggcttctgggaatatgcctttctgtattgaatatacacacataaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atacgctgcatggggcttctgggaatatgcctttctgtattgaatatacacacataaaca 744
Query: 241 tagaaattggaatgatcatatgtacacatgcatatatattttaaataacatttcaatgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagaaattggaatgatcatatgtacacatgcatatatattttaaataacatttcaatgca 684
Query: 301 gtttgaaaatacatatgtatatacatactcacacacatgctgaaatgccatccttcaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtttgaaaatacatatgtatatacatactcacacacatgctgaaatgccatccttcaaca 624
Query: 361 taattcatgatgtgtattgaaatgtatcaaagcagaaacacattccaaaaagaaatactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taattcatgatgtgtattgaaatgtatcaaagcagaaacacattccaaaaagaaatactc 564
Query: 421 actggtgcaattaaatcataaagaagtttaatttgttcacttagtagttaaatgtttatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actggtgcaattaaatcataaagaagtttaatttgttcacttagtagttaaatgtttatt 504
Query: 481 ttgacattttggtcggctgattctttgatgagaatgaacctggaatgaattaagcctggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgacattttggtcggctgattctttgatgagaatgaacctggaatgaattaagcctggt 444
Query: 541 tataatttaagctcagtgtgtgagttaacgtgtttcttcagggagcatacttacactttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tataatttaagctcagtgtgtgagttaacgtgtttcttcagggagcatacttacactttg 384
Query: 601 atgatttacatgaacacatgaaaatacctatttctactgcttttaacttgaaacctgaac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgatttacatgaacacatgaaaatacctatttctactgcttttaacttgaaacctgaac 324
Query: 661 atattcatgaggttcttatttaagaaatgaattcaactgtttgtggactagaatattggt 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 323 atattcatgaggttcttatttaagaaatgaattcaactgtttgtggactagaatatcggt 264
Query: 721 aggtcattttatgtgacattttatcgagatataatattctagtatatcctttccttttga 780
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggtcattttatgtgacatcttatcgagatataatattctagtatatcctttccttttga 204
Query: 781 aac 783
|||
Sbjct: 203 aac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 783
Length of database: 1183
Length adjustment: 10
Effective length of query: 773
Effective length of database: 1173
Effective search space: 906729
Effective search space used: 906729
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
