BAC Information

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BAC

Clone NameMSMg01-146F24
Chromosome2 (Build37)
Map Location 97,213,429 - 97,213,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043267
Downstream geneLrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146F24.T7 (MSMg01no146_f24.b1)MSMg01-146F24.TJ (MSMg01no146_f24.g1)
ACCAG349930AG349931
length1,1811,326
length of high quality
(start - end)
653 (98 - 750)39 (128 - 166)
definitionCHROMAT_FILE: MSMg01no146_f24.b1 PHD_FILE: MSMg01no146_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:04 2005CHROMAT_FILE: MSMg01no146_f24.g1 PHD_FILE: MSMg01no146_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCTCTNNNNNAACACTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATCAATGAATATAATTTGTCCTTTAAATTTCGCCAGAGTTTAG
ATGTATGGCTATAAAGACCTTATACTTAGCTTGGCCGAAATCCTGAGGTA
ATTTTCTAGCATAACAAATGTATAAGAAAACCCATATATTTCTTTTCAAA
ATCAGCACTTAAAATCATAAAAGATGAGAGAGGGTCTAAAGAGATGGATC
AGCAGATCTGGATATTAGTCTAACATCAAAATGGCAGTTTTACAATCATC
TGTTTTTATTCTACGTCCAGGGTATCAGACAACTTCTTCTGGCCTTGTCA
GGCATCACATGCATGCATGTAGTACATAGACATGTATTAAGGCAAATCTC
TGAGAATACATTAATTAATTAATTAATTAATTAATTAATTAATCAATCAA
TTAGCTAATGGTTGCTAGCAAGTAGAAGGAGGAGTATGACTCACTAGGTA
CAATGCTTGTCTTATAAGTGTGAGGAGTAGAGCTCAGATCCTCACAATTC
ATGTGAAAGTTTCCTGATAGTAATCCCAGGACAATGGTGAGAAAACAGAA
TCTCCCGTTCAAGTAGGGCAGCCAATTTAATAAAAACAAACATTGGAAAG
GAGGTAGGTAGATCACGATAATTATCAGTTAACTTCTTTAAAACCATACA
AGATTACAGACATATTTGTGATAATGTGTAGAGCAATGATTAATATCAAA
CTTGAAGCAAAACATTTTCTGGAACAATGTTTACATTTGGGTGGAAGAGG
AGTGCTTAATTATTCCATTTCTGACTCCCATGTTGATAGTAGTCCTAACC
AATCCCTTAATGTACATTAATTAACTTTCTTTTCCAGATATTGGATTATA
CTGTAAGCGATAAGAAGAGAGTGAACATAGCCATACTACTCATGCCAAAT
TGCTTAATAATCCATAAAATCCACCAATTCAAAAAACCACGGAACCCCTT
TTTCCCAATATCCCGCCTAGGGATCTTAAAGTATTTAATGTGCAAAATTT
TTTGAGAACCAACCCTGGAACCCCGAAAATAAAACAAAATTTCCTCCAAA
AAAAATAAGTTCTCGGCCAAATAAAGAAAATATAAAAATCTCCCCCCCAA
ATTCCTCTTAAATTTTTGGGGAAAAAAATTA
NNTTCCGGGGGTGGTCGGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTCTTGGGGGCTGTTCTATACCCCATTTTTTGAT
TGGGCCCTTTGGGGGTATTATCCCCCTATTTATTTATTTATTTATTTATT
TATTTATTTATTTATTGGGGGTNNNTCCCCTCTNTTTCCCCCCCCCCCCT
TCTTCCTCCTTCCCCTCCCCCTCCCCTTCCCTCCCTCTCCCCCTCTCCCC
CCCCTCTCCCCTTCCCCCCTCTCCTCCCCCTCCTCTCTCCCTTCTTCCTT
CCTCTTCTTCCCCCTCTTTTCTCCCTCCCTCCTCTCCCTCCTTCCCCTCT
TCCCCCTCTCCTCCCCCTCTCCCCCCCCCCCCTCCCTTTTTTTTTCTCCC
TCCCCCTCCCCCCCCCCCTTTCTCTCTTCTTCCCCCCCCCCCCCCCTTCT
CCCCCCCCCCCTCCTCTTCCCCCCCCCTCCTTCTCCTTCTCTCCTCTCTC
CCCCCCCTCTCCCCTCTTTCCCCTCCCCCCCTCCCCCCCCTCCCTTCCCC
CCTCCTCCCCTCTCCCCCCCCCCCTCCTCCCCCCCCCTCCTCTCCCCCCC
CCCTCCCTCCCCTCCCCCCTCCTTNTCCCCCCCCTCCTTCTCTCTCCCCC
CCCCCCTCCTCCCCTCTCCCTCCCTCTTCCCCCCCTCTCCCCTTCCCCCC
CCCTTTCCCCTCCCCCTTCCCCCCCCTCCCCCCCTCCCTTTTTCCCTCCC
TCCCTCCCCCCCCTTCCCTCCTCCCTCTCCTCCTCCTCCCTCCCCTCCCT
CTTCTCCCCCCTTCCTCCCCCCTTCTCCTCCTCCCCCTCCTTCTCCTCCC
CCCCCCTCCCCTCCCCCCCCTCCCCCCCCCCCCCCCCCTCCCCCTTCCCC
CNCCCCCTCCCCCCCCTCCCCCTCCCCTCTCCCCCTCCTCCCCTTCTCCC
TCCTCTCCCTCTTCCTCCTCCCCCTCTTCCCCCCCCCCCCCTCTCCCTTC
TCTCCTTCTCCCTCCCCCTCCTCTTCTCTCTCTTCCCCCTCTCCTCCCTC
TCTCCCCTCCTCTCCTTCCTTCTTTCCCCCCTCTTCTCCCTCCCTCTTCC
TCTCCCCCTCCCCCCCCTCTCTCTCCCTCTCCCCCCCCCCTCCCTTCTCC
CCTTCTCCCTCTCTCTCCCCCCTTCTCCCCCCTCCCTCTNTCTCCTCCTC
CCTCTCTCTCCTCCCCTTTCCCCNCTCCCCCCCTCTCTTCTTTCTCTCCT
CCCCCTCCTCCCCCCCCTCTCTCCTCCCTTCCTCTCTCCCCCCCCCTTCT
CCTCTCTCCTCTCCCCCCTCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_f24.b1 MSMg01no146_f24.b1 CHROMAT_FILE:
MSMg01no146_f24.b1 PHD_FILE: MSMg01no146_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:04 2005
         (653 letters)



>mm_chr2_97212768_97213820
          Length = 1053

 Score =  708 bits (366), Expect = 0.0
 Identities = 388/400 (97%), Gaps = 8/400 (2%)
 Strand = Plus / Minus

                                                                        
Query: 254  ggcatcacatgcatgcatgtagtacatagacatgtattaaggcaaatctctgagaataca 313
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 1053 ggcatcacatgcatgcatgtagtacatagacatgtattaaggcaaatctctgagaacac- 995

                                                                        
Query: 314  ttaattaattaattaattaattaattaattaatcaatcaattagctaatggttgctagca 373
                   |||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 994  -------attaattaattaattaattaatcaatcaatcaattagttaatggttgctagca 942

                                                                        
Query: 374  agtagaaggaggagtatgactcactaggtacaatgcttgtcttataagtgtgaggagtag 433
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  agtagaaggaggagtatgactcactaggtacaatgcttgtcttataagtgtgaggagtag 882

                                                                        
Query: 434  agctcagatcctcacaattcatgtgaaagtttcctgatagtaatcccaggacaatggtga 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881  agctcagatcctcacaattcatgtgaaagtttcctgatagtaatcccaggacaatggtga 822

                                                                        
Query: 494  gaaaacagaatctcccgttcaagtagggcagccaatttaataaaaacaaacattggaaag 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821  gaaaacagaatctcccgttcaagtagggcagccaatttaataaaaacaaacattggaaag 762

                                                                        
Query: 554  gaggtaggtagatcacgataattatcagttaacttctttaaaaccatacaagattacaga 613
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 761  gaggtaggtagatcacgataattatcagttaacttctttaaaaccataaaagattacaga 702

                                                    
Query: 614  catatttgtgataatgtgtagagcaatgattaatatcaaa 653
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  catatttgtgataatgtgtagagcaatgattaatatcaaa 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)