Query= MSMg01no146_j16.b1 MSMg01no146_j16.b1 CHROMAT_FILE:
MSMg01no146_j16.b1 PHD_FILE: MSMg01no146_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:34 2005
(566 letters)
>mm_chr2_119241951_119242916
Length = 966
Score = 1071 bits (554), Expect = 0.0
Identities = 563/566 (99%)
Strand = Plus / Plus
Query: 1 ctccagaagagggagtcaaatcttgttatggatggttgtgagccaccatgtggttgctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccagaagagggagtcaaatcttgttatggatggttgtgagccaccatgtggttgctgg 260
Query: 61 gatttgaactcaagaccttcagaagagtagtcggcactcttaaccactgagccacctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgaactcaagaccttcagaagagtagtcggcactcttaaccactgagccacctctc 320
Query: 121 cagccccagccctcttgccttaaacacccaagtgtcagtgatggggatataagtcttcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagccccagccctcttgccttaaacacccaagtgtcagtgatggggatataagtcttcct 380
Query: 181 gcttcaggccgggactgtactttattatttttattggtttaaatttctgatttttggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcaggccgggactgtactttattatttttattggtttaaatttctgatttttggaag 440
Query: 241 actgtttttgagttgacaccggtcattatttatttgggaagtcttgaaatgtaacaaaat 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 actgtttttgagttgacaccggtcattagagatttgggaagtcttgaaatgtaacaaaat 500
Query: 301 ttttatgtgcataaatacaatttttagtagttttaattggctttatgacatactaggaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatgtgcataaatacaatttttagtagttttaattggctttatgacatactaggaat 560
Query: 361 aatagttctggcatttctctttcagaaacctaagcttcctctcttaggatcttggtacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatagttctggcatttctctttcagaaacctaagcttcctctcttaggatcttggtacag 620
Query: 421 agatcaggttaaaagagaatgaaatcagccatgtagcagtgaagcctgatgctgctttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatcaggttaaaagagaatgaaatcagccatgtagcagtgaagcctgatgctgctttct 680
Query: 481 acacaagtacttggctttagatactttctataaaacatacactttcctaatcaactatca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacaagtacttggctttagatactttctataaaacatacactttcctaatcaactatca 740
Query: 541 ttctaagatttctccagagagacagg 566
||||||||||||||||||||||||||
Sbjct: 741 ttctaagatttctccagagagacagg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j16.g1 MSMg01no146_j16.g1 CHROMAT_FILE:
MSMg01no146_j16.g1 PHD_FILE: MSMg01no146_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:34 2005
(397 letters)
>mm_chr2_119337265_119338062
Length = 798
Score = 694 bits (359), Expect = 0.0
Identities = 388/405 (95%), Gaps = 15/405 (3%)
Strand = Plus / Minus
Query: 1 caggactacatatggaaaccttgtctc----cctaaacaaaaaaccccc----aacaacc 52
||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct: 566 caggactacatatggaaaccttgtctcaaaa---aaacaaaaaa----caaaaaacaacc 514
Query: 53 ccctcctcccctaaaaaagccacacttcttagtgcctggctcctttatccaacattattt 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ccctcctcccctaaaaaagccacacttcttagtgcctggctcctttatccaacattattt 454
Query: 113 tgatgtatgttgtgtgtctagttgattttcttttttgtatggtattctgtgtagcctacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgatgtatgttgtgtgtctagttgattttcttttttgtatggtattctgtgtagcctacc 394
Query: 173 tgaaagggatatgctccaacaagcatgtcatgaggtgagttgacagttgtgtgaagatcg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgaaagggatatgctccaacaagcatgtcatgaggtgagttgacagttgtgtgaagatcg 334
Query: 233 aatggaggattacaagatcgctgatccagagcaaagatgaaaagaacaaccactgtacca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatggaggattacaagatcgctgatccagagcaaagatgaaaagaacaaccactgtacca 274
Query: 293 ctgtcatctgacacactgttattaataaattggattttgttctgatttagtttggttttg 352
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 273 ctgtcatctgacacactgttagtaaaaaattggattttgttctgatttagtttggttttg 214
Query: 353 gttttgatttatttttgtctgtttgtttgtttgtttgtttttgac 397
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gttttgatttatttttgtctgtttgtttgtttgtttgtttttgac 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 798
Length adjustment: 9
Effective length of query: 388
Effective length of database: 789
Effective search space: 306132
Effective search space used: 306132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
