Query= MSMg01no146_k17.b1 MSMg01no146_k17.b1 CHROMAT_FILE:
MSMg01no146_k17.b1 PHD_FILE: MSMg01no146_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:43 2005
(296 letters)
>mm_chr2_13126054_13126749
Length = 696
Score = 524 bits (271), Expect = e-153
Identities = 286/293 (97%), Gaps = 4/293 (1%)
Strand = Plus / Plus
Query: 1 attaaaatcaacccacataactgcatccaggctcgatgagacaatagcgctgtgagtgct 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaatcaatccaaataactgcatccaggctcgatgagacaatagcgctgtgagtgct 260
Query: 61 tctaggtatcaggaaagatgcagttcaggactagacccacaaaaagaggaaatgtgttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaggtatcaggaaagatgcagttcaggactagacccacaaaaagaggaaatgtgttag 320
Query: 121 ggaaatcccatactcttccttgttttctccctcaggcatttctaggcagttaggcctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaatcccatactcttccttgttttctccctcaggcatttctaggcagttaggcctgaa 380
Query: 181 ttgagagatcagacaacacagagttgaaaggacagatctcacaatgtgtctacaaaggaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagagatcagacaacacagagttgaaaggacagatctcacaatgtgtctacaaaggaa 440
Query: 241 gcaaggcagcaagaagaagaaaggagctaggaaaacggggggttttggggggg 293
|||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gcaaggcagcaagaagaagaaaggagctaggaaaacgggggg----ggggggg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_k17.g1 MSMg01no146_k17.g1 CHROMAT_FILE:
MSMg01no146_k17.g1 PHD_FILE: MSMg01no146_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:43 2005
(667 letters)
>mm_chr2_13296747_13297813
Length = 1067
Score = 942 bits (487), Expect = 0.0
Identities = 519/537 (96%), Gaps = 13/537 (2%)
Strand = Plus / Minus
Query: 1 attccatggactagctgcctcattcattcacttgtttattcattcattcattcattcatt 60
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 528 attccatggactagctgcctcattcattcacttg------------ttcattcattcatt 481
Query: 61 cattcattagttcattcaatgtaggtattgattatgagcagtcaccacgaggccattggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cattcattagttcattcaatgtaggtattgattatgagcagtcaccacgaggccattggt 421
Query: 121 attgagtgtggcatatcccctaccccctctacccttgatctaaggatcttagtttgctac 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attgagtgtggcatatcccccaccccctctacccttgatctaaggatcttagtttgctac 361
Query: 181 aggctctgagaacctgggacattcaagaagagcatctgctttgagcccgtgcttgtgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggctctgagaacctgggacattcaagaagagcatctgctttgagcccgtgcttgtgaga 301
Query: 241 aggaagaggaaaaaggggttgattatgcccgttagtcaacaggttctccagtgcaggagt 300
||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 300 aggaagagggaaaaggggttgaccaagcccgttagtcaacaggttctccagtgcaggagt 241
Query: 301 gaggattaaaaagaaaaaggacagccagacaacattgtagcgtgaccccagtcaattctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaggattaaaaagaaaaaggacagccagacaacattgtagcgtgaccccagtcaattctg 181
Query: 361 aaactgaaggcacattttttattttccaacccacttttttttttaattaggtattttcct 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 180 aaactgaaggcacattttttattttccaacccac-tttttttttaattaggtattttcct 122
Query: 421 cgtttacattttcaatgctatcccaaaagtcccccatacccacccccacaatcccctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtttacattttcaatgctatcccaaaagtcccccatacccacccccacaatcccctacc 62
Query: 481 cactcactccccctttttggccctggggttcccctgtactggggcatataaagtttg 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cactcactccccctttttggccctggggttcccctgtactggggcatataaagtttg 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
