Query= MSMg01no146_m24.b1 MSMg01no146_m24.b1 CHROMAT_FILE:
MSMg01no146_m24.b1 PHD_FILE: MSMg01no146_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:02 2005
(513 letters)
>mm_chr2_168812977_168813889
Length = 913
Score = 812 bits (420), Expect = 0.0
Identities = 432/436 (99%)
Strand = Plus / Minus
Query: 1 tgcaaggtcatatgctcgcacggcagcaggatatacacaaaagaagcatggccctgcaca 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 436 tgcaaggtcatatgctcgcacggcagtaggatatacacaaaagaagcatggccctgcaca 377
Query: 61 actctctcatccttagcagatagcaaagttcagatcaggagacatgaaccgcggtgggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 actctctcatccttagcagatagcaaagttcagatcaggagacatgaaccgcggtgggaa 317
Query: 121 tggggaggggcagggcggcgcatctcgggtgccaggtcactgaaacaccagccaactact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tggggaggggcagggcggcgcatctcgggtgccaggtcactgaaacaccagccaactact 257
Query: 181 gttccggttggtgtttctcaacatgaaacaacgtgaaacaacccgggggatgtacctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttccggttggtgtttctcaacatgaaacaacgtgaaacaacccgggggatgtacctggg 197
Query: 241 aagagggaacctcagctgagaaattgttgccctcagaatgacctgtaggcaagtctgtgg 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 196 aagagggaacctcagctgagaaattgtcgccctcagaatgacctgtaggcaagtctgtgg 137
Query: 301 agcagtttcttggttaatgattgacatgggagggcgccgcccactgtgggcggtgccaca 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ggcagtttcttggttaatgattgacatgggagggcgccgcccactgtgggcggtgccaca 77
Query: 361 ccaaggcaggtgggcctgtcctgtatctgtaagccagggcagaacatgccatgggaaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ccaaggcaggtgggcctgtcctgtatctgtaagccagggcagaacatgccatgggaaagc 17
Query: 421 aagccagcaagcagca 436
||||||| ||||||||
Sbjct: 16 aagccagtaagcagca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_m24.g1 MSMg01no146_m24.g1 CHROMAT_FILE:
MSMg01no146_m24.g1 PHD_FILE: MSMg01no146_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:02 2005
(623 letters)
>mm_chr2_168730162_168731184
Length = 1023
Score = 949 bits (491), Expect = 0.0
Identities = 571/629 (90%), Gaps = 50/629 (7%)
Strand = Plus / Plus
Query: 1 aaaactgtacaggagacaatcaggttgtatttaatgtaggaagcacagcttccagaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aaaactgtacaggagacaatcaggttgtatttaatgtaggaagcacagcttccagaaagc 256
Query: 61 gctaaaaagagcagaactggggctggagagatggctcagtggttaagggcactgactgtt 120
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 257 gctagaaagagcagaactggggctggagagatggctcagtggttaaggacactgaccgtt 316
Query: 121 cttccagaggttcagagttcaattcccagcaaccacatggtggctcacaaccatctgtaa 180
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 317 cttccagaggttcagagttcaatttccagctaccacatggtggctcacaaccatctgtaa 376
Query: 181 tgggagctagtgccctcttctggcctgcaggtgtacatacaggcctttttttttttt--- 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgggagctagtgccctcttctggcctgcaggtgtacatacaggccttttttttttttttt 436
Query: 238 -ccttcaaagaaagaaatgtccacccggaaggctggagaggatgttgtctaacaacctgg 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tccttcaaagaaagaaatgtccacccggaaggctggagaggatgttgtctaacaacctgg 496
Query: 297 tgacctttccctattctgaggagccagccttaggccttaattttgagcttttgtctctct 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 tgacctttccctattctgaggagccagtcttaggccttaattttgagcttttgtctctct 556
Query: 357 gcaaatagagagcccttcctttattcagaggctccactactctgcgtccatccttagaat 416
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 557 gcaaatagagagcccttcctttattcagaggctccactactctgcatccatccttagaat 616
Query: 417 ccatccttatatttatcacaatccctcctccccaggcccggattcctgaggcttgcttat 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccatccttatgtttatcacaatccctcctccccaggcccggattcctgaggctt------ 670
Query: 477 ctgtcaactcgtcctcatggtcaggatctcagttgctttgctaagggagtgtcctgagct 536
||||||||||||||||||||||
Sbjct: 671 --------------------------------------tgctaagggagtgtcctgagct 692
Query: 537 ttgttgggataactgtggagaccttctttccaaagctttacgatatttaaaggcttaag- 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttgttgggataactgtggagaccttctttccaaagctttacgatatttaaaggcttaagg 752
Query: 596 -aaaaaaaaaacaaaactgtctggccaaa 623
||||||||||||||||||||||||||||
Sbjct: 753 aaaaaaaaaaacaaaactgtctggccaaa 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
