MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-146N21
Chromosome	2 (Build37)
Map Location	102,722,653 - 102,839,408
singlet/doublet	doublet
Overlap gene	Cd44
Upstream gene	LOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
Downstream gene	Pdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100043302 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Commd9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76501 MGI:1923751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ldlrad3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:241576 MGI:2138856
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC674202 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 441 ESTs, 4 Proteins pseudo : _no_value

name	Trim44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80985 MGI:1931835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fjx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14221 MGI:1341907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E430002G05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210622 MGI:2445082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc1a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Cd44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Pdhx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27402 MGI:1351627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56369 MGI:1926788
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ehf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13661 MGI:1270840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Elf5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13711 MGI:1335079
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cat (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12359 MGI:88271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abtb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:99382 MGI:2139365
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nat10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98956 MGI:2138939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Caprin1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53872 MGI:1858234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 51 ESTs, 8 Proteins

name	LOC100042961 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100042965 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042965
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	Lmo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16909 MGI:102811
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043302 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249965 GeneID:100043302
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043302 transcript_id : XM_001479675.1

name	Commd9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384915 GeneID:76501 MGI:1923751
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 9 transcript_id : NM_029635.2

name	Ldlrad3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001548 GeneID:241576 MGI:2138856
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : low density lipoprotein receptor class A domain containing 3 transcript_id : NM_178886.2

name	Trim44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68989253 GeneID:80985 MGI:1931835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 44 transcript_id : NM_020267.2

name	Fjx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059107 GeneID:14221 MGI:1341907
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : four jointed box 1 (Drosophila) transcript_id : NM_010218.2

name	E430002G05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982079 GeneID:210622 MGI:2445082
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E430002G05 gene transcript_id : NM_173749.3

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347512 GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_001077514.2

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892173 GeneID:20511 MGI:101931
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_011393.2

name	Slc1a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117606274 GeneID:20511 MGI:101931
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 1 (glial high affinity glutamate transporter), member 2 transcript_id : NM_001077515.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540467 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_001039151.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540465 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_001039150.1

name	Cd44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85540470 GeneID:12505 MGI:88338
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD44 antigen transcript_id : NM_009851.2

name	Pdhx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802665 GeneID:27402 MGI:1351627
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pyruvate dehydrogenase complex, component X transcript_id : NM_175094.3

name	Apip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803057 GeneID:56369 MGI:1926788
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : APAF1 interacting protein transcript_id : NM_019735.3

name	Ehf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76096376 GeneID:13661 MGI:1270840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ets homologous factor transcript_id : NM_007914.3

name	Elf5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802240 GeneID:13711 MGI:1335079
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E74-like factor 5 transcript_id : NM_010125.2

name	Cat (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753271 GeneID:12359 MGI:88271
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : catalase transcript_id : NM_009804.1

name	Abtb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49402266 GeneID:99382 MGI:2139365
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and BTB (POZ) domain containing 2 transcript_id : NM_178890.3

name	Nat10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130147 GeneID:98956 MGI:2138939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-acetyltransferase 10 transcript_id : NM_153126.2

name	Caprin1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:42558247 GeneID:53872 MGI:1858234
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell cycle associated protein 1 transcript_id : NM_016739.2

name	LOC433458 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249978 GeneID:433458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 ESTs, 2 Proteins product : similar to trafficking protein particle complex 6B, transcript variant 1 transcript_id : XM_485041.5

name	Lmo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254347 GeneID:16909 MGI:102811
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM domain only 2 transcript_id : NM_008505.3

name	LOC100043302 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249966 GeneID:100043302
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479725.1

name	Commd9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313224 CCDS:CCDS16465.1 GeneID:76501 MGI:1923751
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : COMM domain containing 9 protein_id : NP_083911.1

name	Ldlrad3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124001549 GeneID:241576 MGI:2138856
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : low density lipoprotein receptor class A domain containing 3 protein_id : NP_849217.2

name	Trim44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68989254 CCDS:CCDS16466.1 GeneID:80985 MGI:1931835
definition	GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] codon_start : 1 note : brain cDNA 7; DIPB product : DIPB protein protein_id : NP_064663.2

name	Fjx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059108 CCDS:CCDS16467.1 GeneID:14221 MGI:1341907
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] codon_start : 1 product : four jointed box 1 protein_id : NP_034348.2

name	E430002G05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982080 CCDS:CCDS16468.1 GeneID:210622 MGI:2445082
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : regeneration associated muscle protease protein_id : NP_776110.2

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606277 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 1 protein_id : NP_001070982.1

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117606275 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 2 protein_id : NP_001070983.1

name	Slc1a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106409 CCDS:CCDS16469.1 GeneID:20511 MGI:101931
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0017153 - sodium:dicarboxylate symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006835 - dicarboxylic acid transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; glial high affinity glutamate transporter; solute carrier family 1, member 2 product : excitatory amino acid transporter 2 isoform 3 protein_id : NP_035523.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540468 CCDS:CCDS16471.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform c is encoded by transcript variant 3 product : CD44 antigen isoform c protein_id : NP_001034240.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540466 CCDS:CCDS16470.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : CD44 antigen isoform b protein_id : NP_001034239.1

name	Cd44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85540471 CCDS:CCDS16472.1 GeneID:12505 MGI:88338
definition	GO_component : GO:0009897 - external side of plasma membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IMP]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0001658 - ureteric bud branching [Evidence IMP] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : CD44 antigen isoform a protein_id : NP_033981.2

name	Pdhx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201978 CCDS:CCDS16473.1 GeneID:27402 MGI:1351627
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0031405 - lipoic acid binding [Evidence IEA] codon_start : 1 note : dihydrolipoamide dehydrogenase-binding protein of pyruvate dehydrogenase complex (E3-binding protein) (proX) product : pyruvate dehydrogenase complex, component X protein_id : NP_780303.1

name	Apip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981004 CCDS:CCDS16474.1 GeneID:56369 MGI:1926788
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP] codon_start : 1 exception : mismatches in translation note : monocyte macrophage 19 product : APAF1 interacting protein protein_id : NP_062709.2

name	Ehf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6681287 CCDS:CCDS16475.1 GeneID:13661 MGI:1270840
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] GO_process : GO:0030855 - epithelial cell differentiation [Evidence ISS]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : ets homologous factor protein_id : NP_031940.1

name	Elf5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753744 CCDS:CCDS16477.1 GeneID:13711 MGI:1335079
definition	GO_function : GO:0043565 - sequence-specific DNA binding [Evidence IEA] GO_process : GO:0007398 - ectoderm development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : E74-like factor 5 protein_id : NP_034255.1

name	Cat (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753272 CCDS:CCDS16478.1 GeneID:12359 MGI:88271
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA]; GO:0005778 - peroxisomal membrane [Evidence IDA]; GO:0005777 - peroxisome [Evidence IEA] GO_function : GO:0004096 - catalase activity [Evidence IDA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016684 - oxidoreductase activity, acting on peroxide as acceptor [Evidence IDA]; GO:0004601 - peroxidase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0042744 - hydrogen peroxide catabolism [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA] codon_start : 1 exception : mismatches in translation note : catalase 1 product : catalase protein_id : NP_033934.1

name	Abtb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49402267 CCDS:CCDS16479.1 GeneID:99382 MGI:2139365
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : ankyrin repeat and BTB (POZ) domain containing 2 protein_id : NP_849221.2

name	Nat10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346561 CCDS:CCDS16480.1 GeneID:98956 MGI:2138939
definition	GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : novel putative ATPase domain containing protein product : N-acetyltransferase 10 protein_id : NP_694766.1

name	Caprin1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:42558248 CCDS:CCDS16481.1 GeneID:53872 MGI:1858234
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA] codon_start : 1 note : cytoplasmic activation/proliferation-associated protein 1; caprin 1; GPI-anchored membrane protein 1 product : cell cycle associated protein 1 protein_id : NP_058019.2

name	LOC433458 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249979 GeneID:433458
definition	codon_start : 1 product : similar to trafficking protein particle complex 6B isoform 1 protein_id : XP_485041.2

name	Lmo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678702 CCDS:CCDS16482.1 GeneID:16909 MGI:102811
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : LIM only 2 product : LIM domain only 2 protein_id : NP_032531.1

name	LOC100042961 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042961
definition	number : 2 pseudo : _no_value

name	LOC100042961 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042961
definition	number : 1 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 3 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 2 pseudo : _no_value

name	LOC100042965 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042965
definition	number : 1 pseudo : _no_value

name	LOC674202 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249969 GeneID:674202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 441 ESTs, 4 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_034336.1

clone name	MSMg01-159I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-394G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-326B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-135B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476C18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520O11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377G16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-448C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165J17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-339M03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-093C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546N18
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-324K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-146N21.T7 (MSMg01no146_n21.b1)	MSMg01-146N21.TJ (MSMg01no146_n21.g1)
ACC	AG350290	AG350291
length	1,195	1,178
length of high quality (start - end)	264 (137 - 400)	532 (91 - 622)
definition	CHROMAT_FILE: MSMg01no146_n21.b1 PHD_FILE: MSMg01no146_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:09 2005	CHROMAT_FILE: MSMg01no146_n21.g1 PHD_FILE: MSMg01no146_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:09 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(102,839,145 - 102,839,408)	(102,722,653 - 102,723,183)
sequence	NCCCTTTTGNNNNAAACATTGGGCGCTATGACTCCTATGGGAGAGGATCC GCGGAATTCCCTCCCTTAAAAAATCAATAAAACCTCTTACTAGAAACCTC TGCTCTTGCTGTTTCCTTTAGACGCTGGTCTCCGGGGTGTTATGAGGAAG GTGAAGTTGTAGGCAGATCCAGGAGACTGCTACCCCCGTGTCAGATGGTA GTGAGAATGCACTACTTGGTACTTGGTGCCTTTATAAAGAGGGACATCAA AAGGCTGTGACTGATATGGGCCAAGGCACTTGAATGCAAGGTGACAAAAT AAAAACTGGGGAAGTACACTGCTTTCTCAGGAATGAAAGGTGGTGTCCCA GATTTCTCAGAGTGGGAAGGACCCAGCTTTGAAATTATCTGCTATAGACA TTTTTTTTCCCAACTCTTCAGGTTATTCTAGGGTATGACCTGTGACTCCC GCCCAAGGGACAGAGCTGGTGTAATCTCTTGATCGCCCCAATTCAAGGTA CCTGTTTAATGAAAGAAATCACCCAGGCTTATGGACTAGAACTAATTATT AAATTTCTGGTCCTGAAGTCCCTGTTGGCTCCTATGGTTTCTTGAGGTCC ATTGAATGGAAATCTTGGCAACAGAAGCCTGAAACAAAGTCCAAGCTCCC CCTCAGACTGTCCTAAGGGTAGCTTTTGATCATGAATTATATCGATTCTT CCCCAGAGTCAGTATTAACCTTCTGGTTGGTGCAAGCAACACAGCATTAT CCATATAAGGTAAGTTAGCTTTATCTTCGTTTGTCTGTGGTTTGAGATCT GTGTCTTTCTTTTATTGTCTTTGCTGTTTTTCATATTTTCCTTTTTTTTC CTCTTTGCCTTGTTTATCTTTATTAATTATTTTTATGGTTGTTTTTATTA ATGTCTTTTTCTTGTTATGTCTGTTTCTTTGTTTTATTCCTTTTTTTTAT CTTTTTCTTGTTTTTTTTGTTTTTTAATTTTTTATTTTTTTCTGTTTTTT TTTCTTGTTGTTTTATTTTCTTTTCTTCTTTCTCATTATCTTTTTTTTTT ATATTATTTTTTTTTCTTCTTCTTTTTTTCTCTATTCTTACCATCTTCTT TTTTTTCTTTCTTTCTTCTTACCCTCCATCTTTTCTTCCTTTACTCTTCT TTTAACTTTATTTACTCTATCATTTTCTTCTTTTCTTCTTTATTC	NCCCGTTTTTTTTTTTAAGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTTAAGCTAACTATGCTCAG AAATGAAATGAAGACTTTCCCTAGGCAGTTGAAAGCCCCCCTCAAATGTA CCAGGAGCATAGTTAGGACTGAATGGGGAAGAGAGAGGCCTTGGAGCCTT AGGATTGTAACAATGATCATAATTATTACTCTTGAATGCTTGTTCCATGC CAGACTTTCTATCAAGGGCTTCATGTACAGCATCCCAGCAGTGCTTAAGC CGTGGGAATTAAGCCTCCGTTTCAGAGAAGAGACAAATGAGACACGGAGA GGCTAAGTGCATCACTTAAGGCAGTGTAACTGGCAAGCGGCAGGACTAGA ATCCAGCTGTGATGCCAGGACCCACATTACATCCTGAGCATACAGGACAC AGACGACTCTGACAGTCAGGACTTAACTATGTGGTCTGGAGTAAACATTT TTTATTCCAGACTTTAGAAAAAGATAAACTGCCTGGCTCTAGGAGACATT GTTTCTTGGTCGCCTGTTTGAAACTGGGGCCTGTTTCTGAATGCCTTCCC GGAGGTTGGGGGTTGGGGGTGNCTGNNNNNNNTGTTTGNTTTTTTTTTTT TTTTTTTTTTTNTGTTTTTTTTNTTTGTTTTTTTTGTTTTTTTTTTGTTT GTTTGNTGTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTG NGTTTTTTTGTTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTTTTGT TTTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGTTTTTTTTTTTTT TTTTTGTTTTTTTTTTTTTTGTTTTTNTTTTTTTTTTTTTTTTTTTTTTT TTTTTTGCGGTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTT TTTGTTTTTTTTTTTTTGTTTTTTTTGTTTTTTTGTGTTTTCTTTTGTTT TTTTTTTCTTTTTTTTTTTNTTTCTGTTTTTTTTCTTTTTTTCTTTTTTT TCTTCTTTNTCTTCTTTTGTTTTTTTTT
quality values	Open. Hide. 0 3 8 8 8 8 9 9 3 0 0 0 0 3 9 6 7 7 7 7 7 8 8 10 8 8 8 8 8 8 15 15 8 8 8 8 10 8 8 23 19 33 33 33 33 36 42 48 53 50 50 50 53 53 53 42 42 57 42 42 38 50 36 36 31 31 31 30 28 25 21 18 11 11 9 9 9 9 10 10 12 12 10 6 6 6 10 10 16 21 30 31 31 31 44 53 53 53 50 50 36 36 35 35 31 31 31 31 31 23 21 13 9 6 6 8 6 7 7 8 8 8 10 15 14 15 12 14 25 15 9 9 12 9 9 10 22 25 33 33 41 53 53 53 59 59 59 59 59 59 59 59 59 59 59 50 50 47 43 43 43 42 42 48 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 53 53 57 57 57 57 48 47 47 48 48 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 59 59 59 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 68 68 57 59 59 57 57 57 57 68 68 68 68 68 68 59 68 57 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 68 68 68 68 68 68 68 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 54 54 57 57 57 57 57 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 54 54 57 59 59 68 68 57 57 57 43 43 37 37 39 39 42 48 57 68 68 57 57 57 57 57 59 59 57 57 57 59 59 59 59 59 59 59 59 59 59 48 57 43 46 43 43 43 59 59 59 43 48 39 39 39 43 43 48 48 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 46 41 30 22 12 10 9 10 10 13 15 15 15 15 18 21 33 34 47 50 50 50 50 59 59 48 48 48 59 59 59 59 59 59 57 47 39 35 35 42 43 48 54 54 54 54 59 57 68 48 46 46 24 23 9 9 9 14 23 32 30 30 30 29 32 37 44 46 54 54 54 54 54 54 54 59 59 59 59 59 57 59 59 59 59 68 68 68 68 59 59 47 44 44 46 59 59 68 59 59 48 48 48 57 57 68 68 68 68 68 68 59 57 43 43 42 44 44 57 57 43 52 52 52 52 52 43 43 43 43 50 43 52 52 57 57 57 57 43 43 43 38 41 44 38 23 38 38 52 52 57 57 59 57 50 50 43 43 52 44 44 52 52 52 57 52 54 54 57 57 57 57 57 57 57 57 57 57 59 59 59 57 43 43 43 43 50 50 59 59 59 43 43 43 59 59 59 59 57 57 57 57 57 32 32 13 13 12 32 32 43 42 42 37 32 39 32 32 30 37 30 32 15 12 21 15 19 16 15 15 19 16 19 12 12 21 28 15 15 13 13 13 13 13 15 21 21 19 19 19 19 18 18 23 21 23 28 24 23 26 15 20 20 32 32 37 37 30 23 19 12 12 16 15 18 20 28 22 28 30 37 37 47 39 37 33 28 21 26 24 16 16 24 24 24 20 23 23 32 22 20 12 12 11 12 23 22 28 21 19 15 19 24 19 19 11 12 9 9 9 9 13 10 10 12 15 11 11 11 16 12 17 26 22 13 9 9 9 9 11 12 11 12 12 15 11 10 10 10 10 12 13 16 14 10 10 13 10 11 10 12 10 8 8 6 6 8 6 6 8 12 15 15 11 11 12 17 15 10 13 13 11 15 12 11 10 12 14 24 19 10 8 8 9 8 8 12 13 8 9 10 10 8 8 8 10 15 12 9 9 10 7 6 8 12 14 24 24 16 12 13 23 20 29 17 20 19 21 14 14 14 17 12 10 8 8 6 6 8 10 16 15 19 8 8 8 12 10 10 10 14 14 19 21 21 10 10 10 10 10 23 14 8 8 8 10 8 8 8 8 8 8 8 8 8 10 10 10 11 11 11 8 10 8 8 8 15 12 12 11 12 8 8 8 8 10 10 10 13 15 12 8 8 10 13 10 8 8 8 8 8 11 12 10 11 11 8 8 6 6 8 8 8 8 10 7 7 8 8 9 10 8 8 6 11 7 7 10 8 9 9 8 8 10 9 9 9 11 10 10 10 9 10 8 8 8 8 8 17 17 19 13 12 10 10 10 10 13 8 11 15 12 22 15 9 9 9 9 10 13 13 9 10 9 14 14 15 16 9 9 9 9 10 12 8 8 8 8 8 6 7 10 12 14 23 22 19 14 8 8 8 8 8 9 9 9 10 15 13 10 10 10 10 17 12 12 12 10 10 8 8 8 8 8 8 11 7 10 9 9 9 11 8 8 8 8 10 15 20 14 14 12 16 10 10 10 9 8 8 8 6 6 6 7 13 10 20 10 16 12 10 10 9 9 9 12 9 9 9 8 8 8 8 8 8 10 10 16 18 11 11 12 17 15 8 6 6 8 8 12 8 8 8 13 16 16 19 10 8 8 8 8 12 12 15 8 8 7 11 8 8 11 11 11 9 12 14 10 11 11 8 8 6 6 8 8 9 12 13 8 8 8 8 7 7 7 9 9 7 9 10 8 8 10 13 10 8 13 9 9 8 8 8 8 8 8 8 13 8 8 8 10 10 8 8 8 8 8 8 8 14 9 9 8 8 10 8 10 12 10 9 9 13 13 8 10 8 6 6 8 6	Open. Hide. 0 3 11 8 8 8 13 10 11 12 23 25 25 11 9 8 7 7 6 6 6 6 6 6 6 6 6 8 6 6 6 6 8 13 13 8 7 9 8 11 10 18 19 19 8 9 9 23 22 28 28 28 35 35 35 35 35 37 37 35 35 35 36 38 36 53 44 50 50 50 47 47 33 27 11 10 9 12 10 12 8 8 9 9 12 10 15 13 12 10 16 26 28 35 35 50 50 50 50 50 57 57 57 57 57 57 42 38 38 36 36 41 33 33 21 21 16 16 18 12 12 12 12 23 15 23 24 30 33 33 33 25 21 11 12 12 11 11 11 11 25 21 37 37 42 42 33 33 36 36 38 53 57 57 57 57 57 50 50 50 50 47 47 47 47 53 47 68 68 50 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 54 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 59 59 57 57 57 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 48 48 48 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 41 30 21 15 13 13 13 19 19 34 32 41 39 50 59 50 50 50 50 53 53 57 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 54 50 50 47 47 48 48 54 57 57 57 57 57 57 57 57 57 59 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 59 59 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 68 68 59 57 57 57 57 57 57 68 68 68 68 57 57 57 59 59 59 59 68 68 59 68 68 68 68 68 59 59 57 57 57 57 57 68 68 68 68 68 59 59 59 59 59 59 59 68 68 59 59 57 57 59 59 59 59 59 59 57 59 59 59 59 59 59 68 68 59 59 68 68 68 68 59 59 59 54 54 54 54 50 48 57 57 57 57 57 57 50 50 50 53 53 53 59 59 59 53 53 44 44 39 37 47 37 33 21 21 3 0 3 16 3 0 0 0 0 0 0 0 3 15 12 15 8 3 0 3 6 6 6 10 13 16 12 12 10 10 10 13 13 13 11 10 21 19 17 17 3 0 3 6 6 8 8 13 9 13 15 3 0 3 8 8 6 6 8 8 10 14 13 12 8 6 6 12 15 18 10 10 10 14 12 8 8 8 19 10 12 10 13 8 3 0 3 11 10 12 9 10 13 13 15 15 8 6 6 7 7 8 10 10 10 10 9 10 8 8 8 6 6 6 13 15 23 28 19 17 10 9 9 15 13 9 6 8 8 3 0 3 9 15 10 16 8 8 6 6 8 8 15 9 9 9 7 8 8 8 7 8 8 17 6 7 8 8 10 8 9 9 10 9 23 9 9 8 7 7 9 9 15 28 18 18 11 11 20 18 23 12 16 12 12 7 7 8 11 11 9 8 8 8 15 15 17 10 10 8 8 10 9 9 9 8 8 9 13 8 9 8 7 8 6 6 8 7 9 8 8 7 8 8 21 23 26 16 13 11 11 9 22 22 25 11 11 11 18 18 37 32 24 14 14 14 19 19 20 20 20 32 24 30 23 27 15 10 8 7 7 6 7 13 12 9 9 9 9 14 18 25 30 28 22 13 11 10 13 19 15 15 11 13 12 10 10 9 9 10 10 10 10 14 13 9 9 9 9 9 10 11 18 19 24 23 10 11 10 8 8 8 8 19 8 8 6 6 13 8 10 13 22 16 19 11 15 12 17 8 8 8 8 11 9 11 6 6 6 7 6 6 9 19 23 34 25 13 10 6 6 6 7 7 7 3 0 3 8 15 16 10 9 10 16 22 19 10 8 6 6 8 8 10 10 12 12 22 19 13 8 8 7 9 10 8 6 6 6 6 6 17 19 17 16 8 8 10 22 22 19 18 9 9 7 7 6 6 6 9 10 13 9 9 9 9 9 9 12 9 9 10 19 15 12 20 23 13 9 9 7 7 6 6 7 15 8 14 8 9 8 8 8 10 8 11 6 6 8 19 18 12 12 12 15 9 9 9 13 15 20 15 14 9 12 10 10 10 15 16 17 14 14 9 9 9 9 9 13 12 6 6 6 6 6 8 8 8 9 13 13 27 20 22 27 25 19 13 3 0 3 10 7 7 6 6 6 11 19 19 17 10 15 7 6 8 8 11 11 8 8 7 7 8 8 13 21 21 11 10 9 9 9 10 10 10 10 3 0 3 6 8 10 17 13 13 10 9 9 9 17 18 12 12 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no146_n21.b1 MSMg01no146_n21.b1 CHROMAT_FILE:
MSMg01no146_n21.b1 PHD_FILE: MSMg01no146_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:09 2005
         (264 letters)



>mm_chr2_102838945_102839608
          Length = 664

 Score =  480 bits (248), Expect = e-140
 Identities = 260/264 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgttatgaggaaggtgaagttgtaggcagatccaggagactgctacccccgtgtcagat 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 464 gtgttatgaggaaggtgaagttgtaggcggatccaggagactgctacccccgtgtcagat 405

                                                                       
Query: 61  ggtagtgagaatgcactacttggtacttggtgcctttataaagagggacatcaaaaggct 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggtggtgagaatgcactacttggtacttggtgcctttataaagagggacatcaaaaggct 345

                                                                       
Query: 121 gtgactgatatgggccaaggcacttgaatgcaaggtgacaaaataaaaactggggaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtgactgatatgggccaaggcacttgaatgcaaggtgacaaaataaaaactggggaagta 285

                                                                       
Query: 181 cactgctttctcaggaatgaaaggtggtgtcccagatttctcagagtgggaaggacccag 240
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 284 cactgctatctcaggaatgaaaggtggtgtctcagatttctcagagtgggaaggacccag 225

                                   
Query: 241 ctttgaaattatctgctatagaca 264
           ||||||||||||||||||||||||
Sbjct: 224 ctttgaaattatctgctatagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no146_n21.g1 MSMg01no146_n21.g1 CHROMAT_FILE:
MSMg01no146_n21.g1 PHD_FILE: MSMg01no146_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:09 2005
         (532 letters)



>mm_chr2_102722453_102723384
          Length = 932

 Score =  942 bits (487), Expect = 0.0
 Identities = 520/531 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgctcagaaatgaaatgaagactttccctaggcagttgaaagcccccctcaaatgta 60
           ||||||||||||||||||||||||||||||| ||||||||| ||||   |||||||||||
Sbjct: 201 ctatgctcagaaatgaaatgaagactttcccaaggcagttggaagcgttcctcaaatgta 260

                                                                       
Query: 61  ccaggagcatagttaggactgaatggggaagagagaggccttggagccttaggattgtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggagcatagttaggactgaatggggaagagagaggccttggagccttaggattgtaa 320

                                                                       
Query: 121 caatgatcataattattactcttgaatgcttgttccatgccagactttctatcaagggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgatcataattattactcttgaatgcttgttccatgccagactttctatcaagggct 380

                                                                       
Query: 181 tcatgtacagcatcccagcagtgcttaagccgtgggaattaagcctccgtttcagagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgtacagcatcccagcagtgcttaagccgtgggaattaagcctccgtttcagagaag 440

                                                                       
Query: 241 agacaaatgagacacggagaggctaagtgcatcacttaaggcagtgtaactggcaagcgg 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 agacaaatgagacatggagaggctaagtgcatcacttaaggcagtgtaactggcaagtgg 500

                                                                       
Query: 301 caggactagaatccagctgtgatgccaggacccacattacatcctgagcatacaggacac 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 caggactagaatccagctgtgatgccaggacccacattacatcttgagcatacaggacac 560

                                                                       
Query: 361 agacgactctgacagtcaggacttaactatgtggtctggagtaaacattttttattccag 420
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 agacgactctgacagttaggacttaactatgtagtctggagtaaacattttttattccag 620

                                                                       
Query: 421 actttagaaaaagataaactgcctggctctaggagacattgtttcttggtcgcctgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actttagaaaaagataaactgcctggctctaggagacattgtttcttggtcgcctgtttg 680

                                                              
Query: 481 aaactggggcctgtttctgaatgccttcccggaggttgggggttgggggtg 531
           |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 aaactggggcctgtttctgaatgccttcccgggggttgggggttgggggtg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information