BAC Information

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BAC

Clone NameMSMg01-146O07
Chromosome2 (Build37)
Map Location 50,920,441 - 50,921,162
singlet/doubletsinglet
Overlap genenone
Upstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
Downstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146O07.T7 (MSMg01no146_o07.b1)MSMg01-146O07.TJ (MSMg01no146_o07.g1)
ACCAG350310AG350311
length1,2462,129
length of high quality
(start - end)
732 (89 - 820)---
definitionCHROMAT_FILE: MSMg01no146_o07.b1 PHD_FILE: MSMg01no146_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:13 2005CHROMAT_FILE: MSMg01no146_o07.g1 PHD_FILE: MSMg01no146_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCAATTATTNNNNNTACATTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTAGCCTATTATGAAGGCCTTTAAGGAATTCATGTAAA
AGCAAGAGTCTAGCTTATATCGATGCCTTTTGAAGAAACCCCCCCAAATG
AATTTAGATCCCCCCAAAAATATTTACACTGCATAATACAGGTGACATTT
ATTTATACATATATTTACATAAACAAAAATGTAAGTTACATGCGATACAT
AATTATATATTACATATAAAGTGTATATTATATATGTCAGATATATATTA
CACATCAAGTCCTTTAATGCATAAGGACTCTAAGGATGGCCTGATTAAAA
ACAACATATTCACTCACCTATTCATTAAAAAAAATACATACTGAATACCA
ACATGCTACTGTTTCATGGTAAGACCTTTATTAGTTATTTTCTCCTTTTG
AAACTTTAATGAGCACAGATTTGTAATTGGCCGACTAGGAAACCTATATT
CCCATTTCCCAGAGAGGATGCGGGTAAGAACACTGCCCTGTCTGGGCTGC
TTCTGTTTGAGTGAAGACTGTCACTAGGAGTTACAGAGCAAGGGAAGAGG
TTTCAGAAAAACTTGTAGAAGCACTGAGACAATTCCTCGCCATCAATATG
CATAGAATGGTTTTCCCAAGTGAGCAGAACAAAATCCTTTTTGTTTTTTT
CCAAGTAAGTAGCCTCTCATGGGAAAGAAGGTAGAGAGGCGCCCCAGCTG
GCAGGCACACATCTATTTCCAATGGGGCATAAAATCCACTTGACGTTAGA
CCAGGAATGAGAAGGAAGGAGGGCTTTCTCCTCTTCACAAGAATTAAAAT
CATTTTTCATGCTTACAGATCCATTGGAGGGTGGATGCTTGGTTATAGAC
TGATTCCTAAGTGTTGCTTACTCAAGTGTCTTCCTTTAAATAGAATTTGA
GGTTAGATGGCCTTTTAAAACCAACTAACATATCAATCAACCAACCTAAA
CCCTGGTTTTTGGGTTCCAAAAAATAATTTTTAGGGGATCTCCTTTATAA
AAGGTATTTCTTTTGCTGAAATCCCTGTGGAAAAGTAAAAATTACCTTAC
TTTTTATATTTAACCCCCTCATAAAAAAACTTCTCTCCCATCAAGTTAAT
TAAAAAAGGAGTGGGTATCATAACTCCTCCATTAATAATGGTGATCTTCT
TCCGGGAAAAATAACTTCTGCTATAAATATATAATTCCTATTTCTC
GCGCTCTTATTATATAATATGGAGAGAGGGGGNNGGNNNNGNNNNAGNAA
NAAGAGGAGGGAAAGAAGGATAAGAAGGGAGGGAGANAAGCACCTTGTAT
TTATAATAAGAGGANGGATGATGGGNCCCAAAAAACATATTCTTTTTCTA
GNGNNAAGANATATATATATNTGTATGTTTTGTGTGATAGGATATTGAGT
GATGAGTAGTATATATATTTATAGAATAGATAAGTGGTTGTGTGTGTAGT
AAGTTAAGTGGTAGATATTATTGTGTGGATAGATGGTATAGATGTATGAT
AGTGTTGGAGAATGAGTGTGTAAGTTAGTGAAGTTGTGTGNTTGGAAATA
TGTANANGTTGAGTGTATATGATGAATAATGATGGATGGATGGATAGAGT
TAGTAAGTAGATAGGTTGATTGGGATGAGTAAGTAATAGGGAGAGAGATA
GATAGTAAAAAGGAAANTAGTTGAAGATATAGTGAGGTAATGATGTGTTA
TTATATTGGATTGTGATGTTTGATATTATGTGGTGTTATGGTGATAATAT
ATAATGAGAGTTAAGATGGAGTTTTATAGAATTAGATTGAGATAAGGATA
TTGGAGTATGAGTGAATGTAGAAGAAGGGTGGATTTTGTTGTTTTTGTGT
GTAATTTATTGAGTGTGTATGGAAATAAAATATAAGTTGTGTGTTGTAGT
ATGGGATGAGAAGATTTATATAGGAGTAGAAGATTAATGATGTGATTAAT
AAGTGTAGTAGAGTTGTTGATAGTGTTATGTAGAGTATATAGTAGATTGT
AAGAGTTGTGTGATAGATATATGATATGAATATTGATGTGAAAATGTTAT
TATGTGTGATATGAGATAGAGATGAGTGGATTTGTAGTATGAGGTAATGA
GTGGGGTGTGAGTATTGATGAATGTGATGTATTGGTGGATGTTAGAAGTA
TAGATATATGAAGGAAAGATTTATGATGTAGTATAGTGTGAGTTGATAGT
TTGAGAGTGAGTGGTAGAGATTGAAGTATAGTTGTTGTTGATAAGAAATG
AGAATGTGTATGTTGAGTGTGTGGGAATAGGGGAATGTATTATAATGATG
ATAATTTTGATGATTATATTGATTGATTAGTATGTAGTGTAGATAAGGAA
TATATATATGAAGTGGTTATGTATTAGATATGTGTTGGTATGATTATATT
AGTTGAGTAATGTTGTGATATTATGGTGATATGTATGTGTGTGTAATATG
GTTAGATATGTAGATAGTTATTGAGATGTGAGTATGTAAATGGATATGAG
TGATAGAAGTATATGATAGTGGTTAATATGATATGTTATTATGGTATGTA
TGTGAATATGGTAAGATTGAATGTTGTAGTAGTATAAAGTATTGATGTAT
GATATAAAAAGTTGGTGGATGTATATATGGAGTGAGAGAATATGATGTGT
AGATAGGTGATTTAGTGAAATTGTGTTGTATTGAGATGTGTAATTGTGTA
TATGGTTGATAATTGTATTGAGAGTGTTATGTTGTTATATATATATAGTG
ATTGTGATATAAGGTGAGATATGTAAGTATANAATTGANTGAATGAATAG
ATTGTATGATTATATTAAATGGTATTTGTTATTATGTGTAGTAGTAGTAG
TATTAATTTGTGATGATAAAGTATGGAATTGGATTGGATTAGGTGAATAT
TAATTGTGTGTTTATTAGGTAATTGGTAGTGTTTGAATGTAGTGTAGTAT
GAGGTGTGTAGATAGTGTTGNTGGTATGAATTAGTGTGAATTGTATATTA
ATGTTGGTTATTAGTTTTGATGATTTATGTGTGGNATGTATAGTAGGTTA
GATAATTGGTTGTTGATATGGTAGTGATTTGGTATGTAGTGATTGTGGTA
TNTGGAGTATATATGATGTGGTATTTAGTGGATTGAAGGTGTTGTGATTA
TATGAATGTGTGATGATATGGTGAGTTGTTGTTGGAGATTAATNTGTAAG
TGATTGATGTGATTTAGAGTATAGATGATGTGTGGGTTTATTATGAGTAG
TAGATAGGTTAGTGGTGATTGATGTGAGATAGAAGATGTGATGGTTTGAA
GGTAAGTGGTGTTGTAATGAATATGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_o07.b1 MSMg01no146_o07.b1 CHROMAT_FILE:
MSMg01no146_o07.b1 PHD_FILE: MSMg01no146_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:13 2005
         (732 letters)



>mm_chr2_50920031_50921162
          Length = 1132

 Score = 1323 bits (684), Expect = 0.0
 Identities = 712/728 (97%), Gaps = 12/728 (1%)
 Strand = Plus / Minus

                                                                        
Query: 11   aaagcaagagtctagcttatatcgatgccttttgaagaaaccccccc------aaatgaa 64
            |||||||||||||||||||||| |||||||||||||||||      |      |||||||
Sbjct: 1132 aaagcaagagtctagcttatattgatgccttttgaagaaa------ctattttaaatgaa 1079

                                                                        
Query: 65   tttagatccccccaaaaatatttacactgcataatacaggtgacatttatttatacatat 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 tttagatccccccaaaaatatttacactgcataatacaggtgacatttatttatacatat 1019

                                                                        
Query: 125  atttacataaacaaaaatgtaagttacatgcgatacataattatatattacatataaagt 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 atttacataaacaaaaatgtaagttacatgcgatacataattatatattacatataaagt 959

                                                                        
Query: 185  gtatattatatatgtcagatatatattacacatcaagtcctttaatgcataaggactcta 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  gtatattatatatgtcagatatatattacacatcaagtcctttaatgcataaggactcta 899

                                                                        
Query: 245  aggatggcctgattaaaaacaacatattcactcacctattcattaaaaaaaatacatact 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898  aggatggcctgattaaaaacaacatattcactcacctattcattaaaaaaaatacatact 839

                                                                        
Query: 305  gaataccaacatgctactgtttcatggtaagacctttattagttattttctccttttgaa 364
            |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 838  gaataccaacatgctactggaacatggtaagacctttattagttattttctccttttgaa 779

                                                                        
Query: 365  actttaatgagcacagatttgtaattggccgactaggaaacctatattcccatttcccag 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778  actttaatgagcacagatttgtaattggccgactaggaaacctatattcccatttcccag 719

                                                                        
Query: 425  agaggatgcgggtaagaacactgccctgtctgggctgcttctgtttgagtgaagactgtc 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718  agaggatgcgggtaagaacactgccctgtctgggctgcttctgtttgagtgaagactgtc 659

                                                                        
Query: 485  actaggagttacagagcaagggaagaggtttcagaaaaacttgtagaagcactgagacaa 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658  actaggagttacagagcaagggaagaggtttcagaaaaacttgtagaagcactgagacaa 599

                                                                        
Query: 545  ttcctcgccatcaatatgcatagaatggttttcccaagtgagcagaacaaaatccttttt 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598  ttcctcgccatcaatatgcatagaatggttttcccaagtgagcagaacaaaatccttttt 539

                                                                        
Query: 605  gtttttttccaagtaagtagcctctcatgggaaagaaggtagagaggcgccccagctggc 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538  gtttttttccaagtaagtagcctctcatgggaaagaaggtagagaggcgccccagctggc 479

                                                                        
Query: 665  aggcacacatctatttccaatggggcataaaatccacttgacgttagaccaggaatgaga 724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478  aggcacacatctatttccaatggggcataaaatccacttgacgttagaccaggaatgaga 419

                    
Query: 725  aggaagga 732
            ||||||||
Sbjct: 418  aggaagga 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space:   810084
Effective search space used:   810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)