Query= MSMg01no146_p22.b1 MSMg01no146_p22.b1 CHROMAT_FILE:
MSMg01no146_p22.b1 PHD_FILE: MSMg01no146_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:27 2005
(771 letters)
>mm_chr2_53974784_53975954
Length = 1171
Score = 1406 bits (727), Expect = 0.0
Identities = 756/771 (98%), Gaps = 10/771 (1%)
Strand = Plus / Plus
Query: 1 gtttattattatttatttttaatttaactataattaaataaaatcattatttccttcttc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 211 gtttattattatttatttttaatttaaatataattaaataaaatcattatttccttcttc 270
Query: 61 ctctttttcttacacctcccaagttaccacccctcccagatttgtgcaacttattcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctctttttcttacacctcccaagttaccacccctcccagatttgtgcaacttattcttct 330
Query: 121 ttaatcactattattacatatacacataaatgaatagctatgtaaacgcaacctgctgta 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 331 ttaatcactattattacatatacacataaatgaatagctatgtaaaagcaacctgctgta 390
Query: 181 cccagtcattgctatctgcagtttgtggggctgaccatttgactttatgtaagctttcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 cccagtcattgctatctgcagtttgtggggctgaccatttgactttatgtaagctttcaa 450
Query: 241 gtcattctggtctgaggaagactgattctctctctctttaaagttgttgattgctttagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gtcattctggtctgaggaagactgattctctctctctttaaagttgttgattgctttagt 510
Query: 301 tcttcatctaaggccttaaatccaattagacaggtaccaaggggtgcagaaggggcaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcttcatctaaggccttaaatccaattagacaggtaccaaggggtgcagaaggggcaggg 570
Query: 361 ctcagttctatttaagaagtaagccactgagtgtttggtcatgataaaataatttttgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctcagttctatttaagaagtaagccactgagtgtttggtcatgataaaataatttttgta 630
Query: 421 ggggtctcttggactcccctggccaacaactagagaggggtttcccaagtattggatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ggggtctcttggactcccctggccaacaactagagaggggtttcccaagtattggatatt 690
Query: 481 tacgtatatatgtgtgtgtatgtgtgtgtgtacatatccatatgtatgtaggtaaataaa 540
||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 691 tacgtatat--gtgtgtgt--------gtgtacatatccgtatgtatgtaggtaaataaa 740
Query: 541 aatgatgacttttttcttcattattaatgctttttatccatctgacctctctgtctgaat 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 aatgatgacttttttcttcattattaatgttttttatccatctgacctctctgtctgaat 800
Query: 601 tactctcccttctgtcttctcagttaaggactcctcaatatttggtttcttccttcatta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tactctcccttctgtcttctcagttaaggactcctcaatatttggtttcttccttcatta 860
Query: 661 cacttatatcctgctattgccaattctagagccccatcatggtccctttgttctttcctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cacttatatcctgctattgccaattctagagccccatcatggtccctttgttctttcctt 920
Query: 721 gtctctgtggttactttctatcttatatatgcatgtctatagattctgagc 771
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 921 gtctctgtggttactttctaccttatatatgcatgtctatagattctgagc 971
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 771
Length of database: 1171
Length adjustment: 10
Effective length of query: 761
Effective length of database: 1161
Effective search space: 883521
Effective search space used: 883521
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_p22.g1 MSMg01no146_p22.g1 CHROMAT_FILE:
MSMg01no146_p22.g1 PHD_FILE: MSMg01no146_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:27 2005
(756 letters)
>mm_chr2_54081639_54082797
Length = 1159
Score = 1371 bits (709), Expect = 0.0
Identities = 740/751 (98%), Gaps = 3/751 (0%)
Strand = Plus / Minus
Query: 9 tatacttactaccagtagaagctacctatattgacctcagctatccattaccatatccac 68
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 959 tatacttactaccagtagaagctacctatattgaactcagctatccattaccatatccac 900
Query: 69 atagacatatttactgcctttccaaagtattgttttgctcaaatgcataaagttatgttt 128
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 899 atagacatatttactgcctttccaaggtattgttttgctcaaatgcataaagttatgttt 840
Query: 129 tagtgttcttttctctaggcaaactaggcaaactgcattatctttcctgtacagactgta 188
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tagtgttcttttttctaggcaaactaggcaaactgcattatctttcctgtacagactgta 780
Query: 189 cattccaaccataacttagcccttggattttccattacattacttaagttcatagaaatt 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 cattccaaccataacttagcccttggattttccattacattacttaagttcatagaaatt 720
Query: 249 tggaataataattggacacattttctcaagaggtttgaatgattcttggtggagaccaag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tggaataataattggacacattttctcaagaggtttgaatgattcttggtggagaccaag 660
Query: 309 aactgtacctttcagaagactatagaagcctggatttcaatattgtttcgaatattgact 368
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aactgtacctttcagaagacaatagaagcctggatttcaatattgtttcgaatattgact 600
Query: 369 tttcatgccttgcactaaaaacgtactacaaaagctttaatttctcaaaaccaaaatcag 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttcatgccttgcactaaaaacgtactacaaaagctttaatttctcaaaaccaaaatcag 540
Query: 429 aatcatttatttttatctaacagacttctcttgaagttaggaaacacttcagtgagtaga 488
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 539 aattatttatttttatctaacagacttctcttgaagttaggaaacacttcagtgaggaga 480
Query: 489 aaataattcgtagacacttaac-tacttttcaataataatagcacaaatgaaaatctgat 547
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 479 aaataattcgtagacacttaacataattttcaataataatagcacaaatgaaaatctgat 420
Query: 548 ttttaaaattaattaactcataaattttggagaactgaagctaggcctcatacacacaag 607
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 419 ttttaaaattaattaactcataaattttggagaactgaagctaggcctcatacacacacg 360
Query: 608 ctagcactctgcaacagaaccttattcccacctcagattctagaagggagctatgaagaa 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctagcactctgcaacagaaccttattcccacctcagattctagaagggagctatgaagaa 300
Query: 668 gtgcatttaaacattagactgagac--tcaattctcgttttagacagttataagctatga 725
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 299 gtgcatttaaacattagactgagaccctcaattctcgttttagacagttataagctatga 240
Query: 726 aataaaatatgaagctctgaactatttattg 756
|||||||||||||||||||||||||||||||
Sbjct: 239 aataaaatatgaagctctgaactatttattg 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1159
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1149
Effective search space: 857154
Effective search space used: 857154
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
