BAC Information

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BAC

Clone NameMSMg01-147I13
Chromosome2 (Build37)
Map Location 107,359,691 - 107,360,137
singlet/doubletsinglet
Overlap genenone
Upstream gene9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147I13.T7 (MSMg01no147_i13.b1)MSMg01-147I13.TJ (MSMg01no147_i13.g1)
ACCAG350782AG350783
length760692
length of high quality
(start - end)
70 (160 - 229)445 (73 - 517)
definitionCHROMAT_FILE: MSMg01no147_i13.b1 PHD_FILE: MSMg01no147_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:09 2005CHROMAT_FILE: MSMg01no147_i13.g1 PHD_FILE: MSMg01no147_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTNNNNAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCCTATCTCATGTCATAAACTGTGTCAGGCACTAG
AGATATACTACTGAGCAACACAGATTTAGTGCCTGCTTTCTTAGAGCCTA
CACTGTCAAGATGGGGGCTATATAAAAGGTTTTGAATGTTTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCGTGCCCCCCCCCCNNNNNNCCCCC
CCCCCCCCCCCCCCCCCCCCCNNCNCNNCNNCCCNCCCCCCNCCCCNNCN
CCCCCCCCCCCCCCNCCCCCCCCCCCCCCNNNNNCCCTTTCTTTCCTNCC
CCCCCCCCCCCCCCTCCCCCCCTCCTCTTTTCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCTTCTC
CTTCTCCCCCCCCTCCTCTCCCCCCCCTCTCTTTCTCCCCCCCCCCCCCC
CCTCTCCCCCCCCCCCCCCCCCCCCCCCTCCTTCCTCTCTCCCCCCCCCT
CCCCCTCCCCCCTTCTCCCCCCTCCCCCCCCCCCCCTTCCCCTTCCCCCC
CCCCCCCCCCCCCTCCCCCTTCTCTCCCCTTTCCCCTCCCCCCCCTCTCT
TTCCCCCCCCCTCCTTCTCTCCCCCCCCTCTCCTTCCCCCCCCCCCCTCT
CTCCCTCTCCCCCCTCCCCCCCCCCTTTCCCCCCCCTCCCCCCCCCCCCC
CCCCCCTCCC
GAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGCACCCACTCCATTCTCCTCCTCCT
CATACACTGCTCATCTCTCCTAGTGATAACTGCGTTAGGTTTGTCTGTTA
GTTCAGGCACACACAAACATGGCTCAAGCTTAGTCATCTCAAATTAGATA
TTGAGATCTTGCTATACCTTGGGAAGAGGGGCTGAAAGAGTTAATGTAGA
TGAGGCCTTGCCTGCAGCCTATCTTCTCTGAAAGACTGTTAAAATAATTT
TATGTATGTACCAAGATTACATTTTCTGTGCTGTTGGGCTTTGCTGTGTG
TCTCTGGGGCATTTTCTTGCCAGTTCAGTAAGCCCTTTGGTGTTAAGGAG
CTGGTAACCTAGGAAATAATGTGGGGGAAGAAGGCTTTGGAGGTGCTCAG
TTGCCAGTGTGATTGTCAGCCTGGTGGGCCGACTCTGAGGTAGTAGGTGT
GTGTGAGGGTGGGTGAGGNNNNTTNNNNNNNNNNNNNTNNNNNNNNTNTT
NNNTNTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNTTTTCTTTTTTTNTNTTTTTTTTT
TTTNTTCCTTCTNNTTNTTTNTTTTNTNNTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_i13.g1 MSMg01no147_i13.g1 CHROMAT_FILE:
MSMg01no147_i13.g1 PHD_FILE: MSMg01no147_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:09 2005
         (445 letters)



>mm_chr2_107359491_107360337
          Length = 847

 Score =  853 bits (441), Expect = 0.0
 Identities = 445/447 (99%), Gaps = 2/447 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcacccactccattctcctcctcctcatacactgctcatctctcctagtgataactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggcacccactccattctcctcctcctcatacactgctcatctctcctagtgataactg 260

                                                                       
Query: 61  cgttaggtttgtctgttagttcaggcacacacaaacatggctcaagcttagtcatctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttaggtttgtctgttagttcaggcacacacaaacatggctcaagcttagtcatctcaa 320

                                                                       
Query: 121 attagatattgagatcttgctataccttgggaagaggggctgaaagag--ttaatgtaga 178
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 321 attagatattgagatcttgctataccttgggaagaggggctgaaagagagttaatgtaga 380

                                                                       
Query: 179 tgaggccttgcctgcagcctatcttctctgaaagactgttaaaataattttatgtatgta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggccttgcctgcagcctatcttctctgaaagactgttaaaataattttatgtatgta 440

                                                                       
Query: 239 ccaagattacattttctgtgctgttgggctttgctgtgtgtctctggggcattttcttgc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagattacattttctgtgctgttgggctttgctgtgtgtctctggggcattttcttgc 500

                                                                       
Query: 299 cagttcagtaagccctttggtgttaaggagctggtaacctaggaaataatgtgggggaag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagttcagtaagccctttggtgttaaggagctggtaacctaggaaataatgtgggggaag 560

                                                                       
Query: 359 aaggctttggaggtgctcagttgccagtgtgattgtcagcctggtgggccgactctgagg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggctttggaggtgctcagttgccagtgtgattgtcagcctggtgggccgactctgagg 620

                                      
Query: 419 tagtaggtgtgtgtgagggtgggtgag 445
           |||||||||||||||||||||||||||
Sbjct: 621 tagtaggtgtgtgtgagggtgggtgag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 847
Length adjustment: 10
Effective length of query: 435
Effective length of database: 837
Effective search space:   364095
Effective search space used:   364095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)