BAC Information

Click to search

BAC

Clone NameMSMg01-147J16
Chromosome2 (Build37)
Map Location 57,561,396 - 57,562,053
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147J16.T7 (MSMg01no147_j16.b1)MSMg01-147J16.TJ (MSMg01no147_j16.g1)
ACCAG350835AG350836
length740739
length of high quality
(start - end)
164 (49 - 212)658 (78 - 735)
definitionCHROMAT_FILE: MSMg01no147_j16.b1 PHD_FILE: MSMg01no147_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:14 2005CHROMAT_FILE: MSMg01no147_j16.g1 PHD_FILE: MSMg01no147_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGCAGATCCTCCATTATACTGAGAAACTCTAGCAGCTACAT
TTTACCCTTCTGCTCTTCCCATCCCAAAGGAAACAACTCCTGCTTTCTCT
TTTCCTGTGTCCAAATCGGAAGTCCCGCCCACTCACCCAGTGATTGGCTC
CTTTATTCATTAAGGGATTGGTTCACAAGAACAGCACCAGGCCCATCTAC
AACATGAGTGGATATTTCTGAGCCATCACTGGATGAAGGAGATATAAACC
AAACTCATTTCCAAGCTATTTGAATTATTATCTAAAGAGCATGTGAAGCC
ATATCATCAGCAGCATCAATGGATTCATCATACATGAATGATTTCAAAGG
TCAAGGCCTAATCATTGATATCGGCACAATAACTACATCTTTTTTTTTCT
TTATTCAGTCTTCTCCAGGGTATTTTTATTGACACATTTCTTTCTTTTTA
AAAAATTTTTATTAGGTATTTTCCTCATTTACATTTCCATTGCTATCCCA
AAAGTCCCCCCATACCCTCCCCCCAACTCCCCTACCCACCCACTCCTACT
TCTTGACCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCACGACC
AATGGGCCTCTCTGTCCAGTGATGGACAGGCCATCTTCTGATACATATGC
AGCTAGAGACACGAGCTCCGGTGATACTGGTTAGTTCATA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTGGGTTATTATTTTCAT
TTAAAATAGAATTGGAAAGCCTCTATTTAATGGCATTTCAACCATTTGTT
AGTGCAGAAATATATTTCTGAGTATGCTGAAAAACTTCCTGAATTCTTTC
TTCATCCTATGCATTTTGTTGATGGATAAACAGACTGGCTATGTCAATTC
TGGTTTTGCTTCACAGATCACAGGAGAATCATACGCTTTCCTGAGTCTGA
TTAAAGACAATTGCAAATACTCTCCAAATGAACAGAAGGAAGGAAAAGTT
CCTGGAATTTCATGGAAAAAAATGAGTGGAGAAATATGAAATTGTATATT
AGGTAAATACAGGTTCGCAAACGCACTTGGTAGATAGGAAAATTTGTTAT
GAATAATCTATCCCACGATCATTTGCCCCATCATGGTGGGCACAACGGCA
CACACTTTTAATCTCAGAATACTGAAATTTGAGATAAAATAATTACAAGT
CCCAAGTTAGGCTGAACTATATTGTGAGATTGTCTCAAAATATATTTTTA
AAATTCTATACTTTTTCTTGCATTCATTGTTGCTATTTTGAATCTGTAAG
TAGTCAGCAAGAATCTACACAAATGCTGAAAGAATATCCACTATCCACCC
CATTTTAATTGATACCACCTTCATCCACTTGATAAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_j16.g1 MSMg01no147_j16.g1 CHROMAT_FILE:
MSMg01no147_j16.g1 PHD_FILE: MSMg01no147_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:14 2005
         (658 letters)



>mm_chr2_57561196_57562253
          Length = 1058

 Score = 1187 bits (614), Expect = 0.0
 Identities = 647/658 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttttgggttattattttcatttaaaatagaattggaaagcctctatttaatggcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tctttttgggttattattttcatttaaaatagaattggaaagcctctatttaatgccatt 260

                                                                       
Query: 61  tcaaccatttgttagtgcagaaatatatttctgagtatgctgaaaaacttcctgaattct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaccatttgttagtgcagaaatatatttctgagtatgctgaaaaacttcctgaattct 320

                                                                       
Query: 121 ttcttcatcctatgcattttgttgatggataaacagactggctatgtcaattctggtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttcatcctatgcattttgttgatggataaacagactggctatgtcaattctggtttt 380

                                                                       
Query: 181 gcttcacagatcacaggagaatcatacgctttcctgagtctgattaaagacaattgcaaa 240
           ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcacagatcacaggagaatcgtacactttcctgagtctgattaaagacaattgcaaa 440

                                                                       
Query: 241 tactctccaaatgaacagaaggaaggaaaagttcctggaatttcatggaaaaaaatgagt 300
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 tacgctccaaatgaacagaaggaaggaaaagttcctgggatttcatggaaaaaaatgagt 500

                                                                       
Query: 301 ggagaaatatgaaattgtatattaggtaaatacaggttcgcaaacgcacttggtagatag 360
           |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct: 501 ggagaaatatgaaattgtatattaggtaaatacaggttcgcaaatggacttggttgatag 560

                                                                       
Query: 361 gaaaatttgttatgaataatctatcccacgatcatttgccccatcatggtgggcacaacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 561 gaaaatttgttatgaataatctatcccacgatcatttgccccatcatggtgggaacaatg 620

                                                                       
Query: 421 gcacacacttttaatctcagaatactgaaatttgagataaaataattacaagtcccaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcacacacttttaatctcagaatactgaaatttgagataaaataattacaagtcccaagt 680

                                                                       
Query: 481 taggctgaactatattgtgagattgtctcaaaatatatttttaaaattctatactttttc 540
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 taggctgaactatattgtgagattgtctcaaaatacatttttaaaattctatactttttc 740

                                                                       
Query: 541 ttgcattcattgttgctattttgaatctgtaagtagtcagcaagaatctacacaaatgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcattcattgttgctattttgaatctgtaagtagtcagcaagaatctacacaaatgct 800

                                                                     
Query: 601 gaaagaatatccactatccaccccattttaattgataccaccttcatccacttgataa 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaagaatatccactatccaccccattttaattgataccaccttcatccacttgataa 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)