Query= MSMg01no147_k23.b1 MSMg01no147_k23.b1 CHROMAT_FILE:
MSMg01no147_k23.b1 PHD_FILE: MSMg01no147_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(487 letters)
>mm_chr2_148666646_148667531
Length = 886
Score = 861 bits (445), Expect = 0.0
Identities = 480/503 (95%), Gaps = 21/503 (4%)
Strand = Plus / Minus
Query: 1 agaggccctgtctcaaactaactaactaactaactaactaa---------t---taacta 48
||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 748 agaggccctgtctcaaactaactaactaactaactaactaactaactaactaactaacta 689
Query: 49 acaaaaagcaaaacagaaaacatggacttacataagaagtcaataaaattaggtacgttg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 acaaaaagcaaaacagaaaacatggacttacataagaagtcaataaaattaggtacgttg 629
Query: 109 tagaaagtaatcaaatgttacggagattgaaaaagagacaattcaatgaagaaatagttc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagaaagtaatcaaatgttacggagattgaaaaagagacaattcaatgaagaaatagttc 569
Query: 169 atgccagtgcacttgaactctaggttctaaaaatgctcatttcccccaaaatcagtctgt 228
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 568 atgccagtgcacttgaactctaggttctaaaaatgcccatttcccccaaaatcagtctgt 509
Query: 229 atattccacagaattttttt----tatttttactttattttgtgtgtattaataggaaaa 284
|||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 508 atattccacagaatttttttaaaaaa-----actttattttgtgtgtattaataggaaaa 454
Query: 285 ctaatacatattagatttttataaaacccacattggccaggcaaaggaagagtcagtcaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctaatacatattagatttttataaaacccacattggccaggcaaaggaagagtcagtcaa 394
Query: 345 tggaaaaggagcaagatgtgcaattgatgtagtctcactgatgcaggtaaatatgtgtcc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggaaaaggagcaagatgtgcaattgatgtagtctcactgatgcaggtaaatatgtgtcc 334
Query: 405 aaaactttagctatatggtacccatgccattgtagaccatgagaaactgactgtccatag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaaactttagctatatggtacccatgccattgtagaccatgagaaactgactgtccatag 274
Query: 465 atagtttagggggaaactgggct 487
|||||||||||||||||||||||
Sbjct: 273 atagtttagggggaaactgggct 251
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space: 417852
Effective search space used: 417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_k23.g1 MSMg01no147_k23.g1 CHROMAT_FILE:
MSMg01no147_k23.g1 PHD_FILE: MSMg01no147_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:20 2005
(456 letters)
>mm_chr2_148557309_148558164
Length = 856
Score = 843 bits (436), Expect = 0.0
Identities = 451/456 (98%)
Strand = Plus / Plus
Query: 1 gaacctcacagtcctggctcccccgggggatttacgggcccaaccaggggaaatgaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacctcacagtcctggctcccccgggggatttacgggcccaaccaggggaaatgaataa 260
Query: 61 atctggtccaccaggaggggtggcatcctcgaagaggcagctcggcgcggaccctggagc 120
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 261 atctggtccaccaggaggggtggcatccttgaagaggcagcttggcgcggaccctggagc 320
Query: 121 tagcaccggaccgttggcgacgcatgggacttgggggaccacagagatctccgaggacgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcaccggaccgttggcgacgcatgggacttgggggaccacagagatctccgaggacgc 380
Query: 181 gtaggtgttctgggttgtttaagggtgcctggggattgtgagctagaggttctccgggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaggtgttctgggttgtttaagggtgcctggggattgtgagctagaggttctccgggtg 440
Query: 241 tgggtgagttgtgtccaaggcctgaggatccccaaaaggttctggggcttgcagtgtgtg 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgaggggtgtccaaggcctgaggatccccaaaaggttctggggcttgcagtgtgtg 500
Query: 301 ctgactggagagacaccccagacacggcccaagggatgcgatgaggccctggattctacg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ctgactggagagacaccccagacacggcccaagggatgcgatgaggccctggatgctacg 560
Query: 361 ggacccaaaacagagcgtgggccactgggaatcccgtaaccctaagcagttgcgcggggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacccaaaacagagcgtgggccactgggaatcccgtaaccctaagcagttgcgcggggt 620
Query: 421 actctgcggtggcagccggctgggcaggggatcggg 456
||||||||||||||||||||||||||||||||||||
Sbjct: 621 actctgcggtggcagccggctgggcaggggatcggg 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
