BAC Information

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BAC

Clone NameMSMg01-148B06
Chromosome2 (Build37)
Map Location 80,486,471 - 80,487,056
singlet/doubletsinglet
Overlap geneNup35
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381
Downstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B06.T7 (MSMg01no148_b06.b1)MSMg01-148B06.TJ (MSMg01no148_b06.g1)
ACCAG351181AG351182
length708702
length of high quality
(start - end)
371 (52 - 422)562 (80 - 641)
definitionCHROMAT_FILE: MSMg01no148_b06.b1 PHD_FILE: MSMg01no148_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:51 2005CHROMAT_FILE: MSMg01no148_b06.g1 PHD_FILE: MSMg01no148_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGC
GGAATTCACCTATTATATTCTATTGAGATATGATCTATGTTCCTTCTACT
CCCAGTGTGGTGGCTTGAATATACTTGTCCCAGGAGTGGCACTATTACAA
GGTGTGGCCTTATTGGAAAAAAAATGTGTCACTGTGGGGTTGGACTTTGA
AGCTCCACCCACTGTGCAAGAGACAGGCCTGCATGCTGCCATGCTTCCTG
CCATGATGATAATGGACTGAACCTCTGGACCTGTAACATAGTCCCAATAA
AATGTTGTCCTTTATAAGAGTTGCATTGGTCATTGTGTCTCTTCACAGCA
TTGGAAACCCTAAGATACCCAGTTTCTTTAAGGCTTTTATTATAAAAGGA
TGCTGGAGTTTCTTAAAGATCTTCCCCGCATCATTTGGTCTATTATGTTA
GTTTGCATACTATAAACCAGTCTTGTATACAAGGTATGAAAACAATTTGG
TTATGATATATGATCTTCTCTAATATGCATAAAGATTTGCAAGAATCTTT
ATGTCAATTCATCAGGGAAATTAGTACATAGTTATTTTGGTGGTGGTGGC
TGATAGTGGTGCCTCTCTCTATCCCACCCTTTCCCCACCTCTTCCATCCC
ACATCTTATCAACCCTTCACCCCCTTCTCCACTTTTTTTTTCCCCCCCCT
TTATTTCA
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATCGATTAAAGAACCTTCTCT
GTTGAACTTGGAGTGATTTCTGTGTTTGTGCATGGTTACAACTTTGTGTT
TTTAACTTAGCACTCTTTTCATGTAGGCAAACATTTCATTGTTGCAGAGT
CCTCTTGTTGGAGCTACAACTCCTGTGCCTGGTGAGTCCTCTTACTCAGC
TTCTGTTTTCTGCTCTGATGTTTGCCAGAGCAGAAAAAAAACAAAACAAA
ACAAAACAAACTTTAACTCTTTAAATTTGGGGACTGGCTGAAATGTCAGT
AATCTTTACGAAGGCAATGCTTTGTGAATTTACAGATAGGATAGTCTATC
AAAAGTATTAAGAATTTAAGAATGCACACTAAATACATTTTTGAAGTAGT
TCTTGGCTTATAAAAACTGTATAAAATAAAGTTGCCACAAGTGGGTAGAA
GACTGAGGTGTTTTAAGCGGTACTGACACTGAGTTGTAAGCGAGTGTAAT
CCCTGGTTTGTCTTTTACAGCATTCTAGTCACTCTCAGTATCATCCTTAG
GACATGGTCCTTTAAACATGTTTACCATTCCCATTGAATGATGGGAGTTG
CTCAAAAGCGACCTGTGTGAAAGAGACCACACCCGGAAATAATCCTCTAG
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b06.g1 MSMg01no148_b06.g1 CHROMAT_FILE:
MSMg01no148_b06.g1 PHD_FILE: MSMg01no148_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:52 2005
         (562 letters)



>mm_chr2_80486295_80487256
          Length = 962

 Score =  926 bits (479), Expect = 0.0
 Identities = 549/591 (92%), Gaps = 34/591 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgattaaagaaccttctctgttgaacttggagtgatttctgtgtttgtgcatggttac 60
           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 177 atcgattgaagaaccttctctgttgaacttgtagtgatttctgtgtttgtgcatggttac 236

                                                                       
Query: 61  aactttgtgtttttaacttagcactcttttcatgtaggcaaacatttcattgttgcagag 120
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 237 aactttgtgtttttaacttagcactcttttca--caggcaaacatttcattgttgcagag 294

                                                                       
Query: 121 tcctcttgttggagctacaactcctgtgcctggtgagtcctcttactcagcttctgtttt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||
Sbjct: 295 tcctcttgttggagctacaactcctgtacctggtgagtcctcttactcagct--tgtttt 352

                                                                       
Query: 181 ctgctctgatgtttgccagagcagaaaa-----------------aaaacaaaacaaaac 223
           ||||||||||||||||||||||||||||                 |||||||||||||||
Sbjct: 353 ctgctctgatgtttgccagagcagaaaaacaaaacaaaacaaaacaaaacaaaacaaaac 412

                                                                       
Query: 224 aaaacaaactttaactctttaaatttggggactggctgaaatgtcagtaatctttacgaa 283
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 aaaacaaactttaactctttaaatttggggactggctgaaatgtcagtaatctttaggaa 472

                                                                       
Query: 284 ggcaatgctttgtgaatttacagataggatagtctatcaaaagtattaagaatttaagaa 343
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 ggcaatgctttgtgaatttacagataggatagtctaccaaaagtattaagaatttaagaa 532

                                                                       
Query: 344 tgcacactaaatacatttttgaagtagttcttggcttataaaaactgtataaaataa-ag 402
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 533 tgcacactaaatagatttttgaagtagttcttggcttataaaaactgtataaaataagag 592

                                                                       
Query: 403 ttgccacaagtgggtagaagactgag-----------gtgttttaagcggtactgacact 451
           |||| |||||||||||||||||||||           |||||||||| ||||||||||||
Sbjct: 593 ttgc-acaagtgggtagaagactgagatcaaacataggtgttttaaggggtactgacact 651

                                                                       
Query: 452 gagttgtaagcgagtgtaatccctggtttgtcttttacagcattctagtcactctcagta 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gagttgtaagcgagtgtaatccctggtttgtcttttacagcattctagtcactctcagta 711

                                                              
Query: 512 tcatccttaggacatggtcctttaaacatgtttaccattcccattgaatga 562
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tcatccttaggacatggtcctttaaacatgtttaccattcccattgaatga 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)