BAC Information

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BAC

Clone NameMSMg01-148C17
Chromosome2 (Build37)
Map Location 138,844,148 - 138,844,470
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148C17.T7 (MSMg01no148_c17.b1)MSMg01-148C17.TJ (MSMg01no148_c17.g1)
ACCAG351250AG351251
length737736
length of high quality
(start - end)
324 (414 - 737)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no148_c17.b1 PHD_FILE: MSMg01no148_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:59 2005CHROMAT_FILE: MSMg01no148_c17.g1 PHD_FILE: MSMg01no148_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCACT
CTTTGTAGCAAGAAACCTTTCTACTGTTTCTACCATAGTAGTGTTAAGTG
TAAAATGAAGTTCCTACCCAGAAAAATGGGAGTTAAAAATGAATATATAT
TTAATGACAGAATATAATTATATATATTGAAGTACACATATAAATATAGG
TAGCTCATTGACCTTTTGTTAGTGTAGTAATCTATGGCTGCTTCAGAGAG
TAAACTGTGTTGATGCGATAGATAATTGAGGGTAAAGTTCTTTTAAACTG
AGATCAATATAATATAAACTGGCCAAGAGAACTTAGAACGAAGTAATGTT
TGAAAGCCTATGAGAAGAATTATTAATGGCTTTGCTGGGTGACTTTATGA
TATCAAGACCCCCAATGTCATGTTATTGAATTCTAATAATAACCCCCTAA
AAATAGGAATCAGTGGGCTCTTTATTTTATACCCGAGGGAAGATCAATGA
AACAGTTGCAAGAAGTGACAAAGTCTTTCTAACCGTTCATTAGTATTAAC
TTACTAAGCGATGCCAGGAGTCTTTAAATAGGTAAAATAGCAAAACTCAA
AGGGATAGGAACTGTGAGGAAGAGTTGCTTCAAGGGCTGCAGAAAGAGAG
CAATGTCTGTACTACACTCCATGATTAAATGAAATTGTTAGACAGTGCTG
TTCTGTGAGAGAGCCACTTTCTGTTCTGCGTGCTAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTACAAAAAATCACAGCATTTGAGACAGTATGGGCAAGCTGTTCAAG
CAGAGGCCAGACAAAATTCCAGCATGGAGAATGGAGGTAGGTAAGAGGCT
CCAGCCACAGCTAAGAAGCTAATTGCAATAGATAGGGATAAGAAAGTGTG
GGTTTTCTTTAAAGTATGGCCCTTGGTGGGTGGCCCATGCTCCACTGGTA
GACCATACATCCAAAATTATATGGTTAGTACTAAATGTACGTGGTGGTGA
GTTAACAAAAATTGATGGTTATGTTGTATTGATAAGGAGAAAGGTGGATC
TGATAAGAGTGACGCCAGCGGCTGGATGTCAAAACAAACTCATTATGTGA
ACCTCTTCACACAATACATTGTAAAGATATTGGAGGTGTAGCTCAGTGAT
AAAATGCTTCCCCAATGTATGAGAGGGTCTGGATTCAATCTCTAGTAGCA
GAAAAATGAATGAATAAGAAATCAAAACTAACAATGCTTCTGGTCCTTAG
TATTTGTGCTTTCTATGTCTGATGATCCAATCAATCTCAGCCTTAAAATA
TTTGGAAAGTATATTGATACTGAAAACATAGAGATGCTCTTATTTCCACG
ACATAATATTATAGTAGTGTTATATAAAGATTTTTTCTATTTTGCTATTT
TACGTACTGTAGTGATTGTTTACCCTTACTGGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_c17.b1 MSMg01no148_c17.b1 CHROMAT_FILE:
MSMg01no148_c17.b1 PHD_FILE: MSMg01no148_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:59 2005
         (324 letters)



>mm_chr2_138843948_138844671
          Length = 724

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtcatgttattgaattctaataataaccccctaaaaataggaatcagtgggctcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 523 aatgtcatgttattgaattctaataataaccccctaaaaataggaatcagtgagctcttt 464

                                                                       
Query: 61  attttatacccgagggaagatcaatgaaacagttgcaagaagtgacaaagtctttctaac 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 463 attttatacccgagggaagatcaatgaaacagttgcaagaagtgacaaagcctttctaac 404

                                                                       
Query: 121 cgttcattagtattaacttactaagcgatgccaggagtctttaaataggtaaaatagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cgttcattagtattaacttactaagcgatgccaggagtctttaaataggtaaaatagcaa 344

                                                                       
Query: 181 aactcaaagggataggaactgtgaggaagagttgcttcaagggctgcagaaagagagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aactcaaagggataggaactgtgaggaagagttgcttcaagggctgcagaaagagagcaa 284

                                                                       
Query: 241 tgtctgtactacactccatgattaaatgaaattgttagacagtgctgttctgtgagagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgtctgtactacactccatgattaaatgaaattgttagacagtgctgttctgtgagagag 224

                                  
Query: 301 ccactttctgttctgcgtgctaa 323
           |||||||| ||||||||||||||
Sbjct: 223 ccactttccgttctgcgtgctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)