BAC Information

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BAC

Clone NameMSMg01-148E24
Chromosome2 (Build37)
Map Location 66,830,129 - 66,830,743
singlet/doubletsinglet
Overlap genenone
Upstream geneA330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540
Downstream geneGm1322, Cmya3, LOC621171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148E24.T7 (MSMg01no148_e24.b1)MSMg01-148E24.TJ (MSMg01no148_e24.g1)
ACCAG351345AG351346
length732741
length of high quality
(start - end)
614 (36 - 649)616 (73 - 688)
definitionCHROMAT_FILE: MSMg01no148_e24.b1 PHD_FILE: MSMg01no148_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:10 2005CHROMAT_FILE: MSMg01no148_e24.g1 PHD_FILE: MSMg01no148_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAATACACTCCTATAGGTTCAGAATCCGCGGAATTCCTTATA
ACCCCATGCGACAAGGAATAGTTGAACATGCTCATCACACTTTAAAAAAA
AATGCCTTTTTAAGACAAAACAGGGGCAGTTATATCCCCCAAGGTCACCA
AAGGCACATCTTGCCTTTGCTTTATTTGTTCTAAATTTTTTGCAAACTGA
TGTTAAAGGTCAGTCTGCAGCAGATCGCCACTGGCATTCAGTACTTCTAG
TTCTTATGCCATGGTAAAGTGGCAGGACCCATTAACTAATGAATGGAAGG
GTCCAGACCTGGTCCTAATCTGGGGAAGGGGCTCGGTCTGTGTTTTTTTC
ACAAAAAGAAGATGAAGCAGGATGGCTGCCTCAGAGATTTGTTCGTCAAC
TGGACACAGATCCCGAATCTTCTAGTAAGTATGACTCTAACCTTGATTAT
GGCTAAACATTCTCTTTAGCCAAAAAGTCAAATCAGAGCACAGGCTCCAC
TCCCAGAGAAGCTGCAGTCTTCCTGCAATTCTCAAAGCCAGCTCCCACAC
ACCCAGAGGCCAGAGCCTGAGCTTGATCTTTGCTAATTTGCAATTGAATG
GAGTACCTGGACTTCCCCAAAATAAGCTTCTGTACTGTTGCCTTTCGCTG
TCTGGATTTTGGTTTTCTTTCTTTTCTTTTTTTTTTTTTTGGTTTTTTGA
ACAGGGTTTCTCTGTATAGCCCTGGCTGTCCC
AATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATCTTGTTACCTTTAGTTAGTACAGAAA
ATAATTACACTGATGTTACCTGAAATATAGGATTATCATGCACCTTGTTA
GTGTTGTGATATAATGTAACAAAACCAAATATTTATAGTTATATTGTAGT
GAAATGTATTTATTTAATTGAAAAACTGCAGTAAAATACACAATAATTAC
AATTTATAGATTTAATTTAATCAAATGTTTCCTTCCCCATATGAAGTGTA
AGGCTTTAAACAGTTCTTTGCATTGCGATGAATAGTAAATAGAGACTTGA
ACAATGAATAAAGTATTATAAGGAATGTCAGAATTGTAAAAGCATTTCAA
AATAAGCCATAGGAAAAATTGCAAGCTTTATACTATGAATGAGATGACAG
TTATAATTTATATACTGATAAAATACCTTAAATATGATAGGAGTAATCCT
GTAACTTTAGAGTCGAGTGAATGTGATTCAAATGTTGTCCTACACCAAAG
ATCATATTTACATTTTATTTCTTCTCAACAAAATGTTTTTCCCTTCCCTG
AGATTATATTGAAGAACTCCAGAAAAGAATAATGCTATAAAAAGAGTATA
GTTATACAAGAAATTTGTTTCAGTAAATTCTAGCAGATCCTGGAGAACTG
CTGTATGAATTAGGCCATGTTCTGTGTTCATTAGCTGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_e24.g1 MSMg01no148_e24.g1 CHROMAT_FILE:
MSMg01no148_e24.g1 PHD_FILE: MSMg01no148_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:10 2005
         (616 letters)



>mm_chr2_66829929_66830943
          Length = 1015

 Score = 1145 bits (592), Expect = 0.0
 Identities = 610/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcttgttacctttagttagtacagaaaataattacactgatgttacctgaaatatagga 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcttgttac-tttagttagtacagaaaataattacactgatgttacctgaaatatagga 259

                                                                       
Query: 61  ttatcatgcaccttgttagtgttgtgatataatgtaacaaaaccaaatatttatagttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttatcatgcaccttgttagtgttgtgatataatgtaacaaaaccaaatatttatagttat 319

                                                                       
Query: 121 attgtagtgaaatgtatttatttaattgaaaaactgcagtaaaatacacaataattacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attgtagtgaaatgtatttatttaattgaaaaactgcagtaaaatacacaataattacaa 379

                                                                       
Query: 181 tttatagatttaatttaatcaaatgtttccttccccatatgaagtgtaaggctttaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttatagatttaatttaatcaaatgtttccttccccatatgaagtgtaaggctttaaaca 439

                                                                       
Query: 241 gttctttgcattgcgatgaatagtaaatagagacttgaacaatgaataaagtattataag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttctttgcattgcgatgaatagtaaatagagacttgaacaatgaataaagtattataag 499

                                                                       
Query: 301 gaatgtcagaattgtaaaagcatttcaaaataagccataggaaaaattgcaagctttata 360
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 500 gaatgtcagaattgtaaaagcatttcaaaataagccataggaaaaatttcaagctttaga 559

                                                                       
Query: 361 ctatgaatgagatgacagttataatttatatactgataaaataccttaaatatgatagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatgaatgagatgacagttataatttatatactgataaaataccttaaatatgatagga 619

                                                                       
Query: 421 gtaatcctgtaactttagagtcgagtgaatgtgattcaaatgttgtcctacaccaaagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtaatcctgtaactttagagtcgagtgaatgtgattcaaatgttgtcctacaccaaagat 679

                                                                       
Query: 481 catatttacattttatttcttctcaacaaaatgtttttcccttccctgagattatattga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catatttacattttatttcttctcaacaaaatgtttttcccttccctgagattatattga 739

                                                                       
Query: 541 agaactccagaaaagaataatgctataaaaagagtatagttatacaagaaatttgtttca 600
           ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct: 740 agaactccagaaaagaataatgctagaaaaagagtataattatacaagaaatttgttgca 799

                           
Query: 601 gtaaattctagcagat 616
           ||||||||||||||||
Sbjct: 800 gtaaattctagcagat 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space:   609030
Effective search space used:   609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)