BAC Information

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BAC

Clone NameMSMg01-148I06
Chromosome2 (Build37)
Map Location 28,937,307 - 29,013,599
singlet/doubletdoublet
Overlap geneTtf1, Setx
Upstream geneFcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666
Downstream geneNtng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I06.T7 (MSMg01no148_i06.b1)MSMg01-148I06.TJ (MSMg01no148_i06.g1)
ACCAG351488AG351489
length699706
length of high quality
(start - end)		661 (39 - 699)626 (81 - 706)
definitionCHROMAT_FILE: MSMg01no148_i06.b1 PHD_FILE: MSMg01no148_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:26 2005CHROMAT_FILE: MSMg01no148_i06.g1 PHD_FILE: MSMg01no148_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,012,944 - 29,013,599)(28,937,307 - 28,937,932)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TTTCTGTGGCGACCATGGGAGAAGAACAACACCTATTCAACTTTCTTCCA
GTCCATGTCAAATAAAATCATTATCTAAGTGACTGATCTTTCACAACTAG
AGAAAACCTAATTGGACACTAATTACTAGTTAATATCCATACCCATCAGT
TTATTTATAATTGTACTTTAATGCTTTTTACAAATATGACAATAAATTTT
CTTAAATAACTTTTCTTCAGCTATTCCGATATTTTCCATTTAATTCTCTG
CTTCGACAGTGAAAGTTCTAAGAACTCTTCTTTCCTAATACAATGTCACA
AGGTGGAAAACAGCCAGACCTAGTCTAAATTTAGTCTTTCAATTTAGATA
GTTTAGTGAATCAAAGAGGTTAAGAGTATGGCTAAGTCAACTCCTTTGAA
GGTGCAAAATGACTGAATAATGACCATGAAAGCTTCAGTACACAATGAGG
GTTAGAAGTACTGGTTTCCTTTTGCACTTTTTGTTAATTTTCTGGACTAT
ATGTACATTTTTTACAGTGAAAACTACAGGTTCATCTCTTCATTTGCAAC
AATCCCACAGTTCTCCACCAACTCTCTTCAAATACAAAACTCACTCCACA
AAATCTGTGTACAACTCCTGAAATTTTGAGCACCCAGCACACACTGAAG

CCCCCNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCCTGCAACACTGAAGGA
AGTCAGGGCAGGAATTGGAGGCAGGAACAAATGCAGAGGCTGGGAACACT
GCTTGCTTAACCTGCCTCCTTATAGCACTCAGGTTCTCCCACATTCAGAA
ACCTGCCCCACATAGTCCAGTTTGGTGGGGGCATTTCTCCGTTGAGGTTC
CCTCTTTGAAAATGTTTCTGGTTTGTGTCAGACATAAAAGTAGCCAGCAC
AGTTTGACTTTTTTTGTTGTTTTTGTTTTTTAAATAGAAAATAGGTTACA
TTGTGCAGAATAAGAGAGGCATGAAAAAGAACAGTGTGAGTAGCCCTCTG
ACCACAGGAAACCAGCCAGAGAGTTTTCTGGTCCCTTCCCAGAGCATTTG
TGCAAGAGGCTACAGACCCTGGAACATGTCCAACCATCAGAACTCACAGT
GCCCTGGAACCATGTCTGACCATCCGAGCTCACTCTGGCCCTGCACTTTT
CTCCTCCACCTGAAAGGGTCTCCAGGGACTGCCTTTCAGAGGGCAGCTTT
GAGGGCCAGTCTTTTTATAATGGTTCCTGTTTTCATTCTCTCCTCGCTCT
CTCTCCCTCTCCTACCCTCTTACTGCTCTGGCTGGCCTGACCTCCCTCCT
CCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i06.b1 MSMg01no148_i06.b1 CHROMAT_FILE:
MSMg01no148_i06.b1 PHD_FILE: MSMg01no148_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:26 2005
         (661 letters)



>mm_chr2_29012738_29013799
          Length = 1062

 Score = 1237 bits (640), Expect = 0.0
 Identities = 652/656 (99%), Gaps = 1/656 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctttctgtggcgac-catgggagaagaacaacacctattcaactttcttccagtc 65
           ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 862 gaattctttctgtggtgacacatgggagaagaacagcacctattcaactttcttccagtc 803

                                                                       
Query: 66  catgtcaaataaaatcattatctaagtgactgatctttcacaactagagaaaacctaatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 catgtcaaataaaatcattatctaagtgactgatctttcacaactagagaaaacctaatt 743

                                                                       
Query: 126 ggacactaattactagttaatatccatacccatcagtttatttataattgtactttaatg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggacactaattactagttaatatccatacccatcagtttatttataattgtactttaatg 683

                                                                       
Query: 186 ctttttacaaatatgacaataaattttcttaaataacttttcttcagctattccgatatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682 ctttttacaaatatgacaataaattttcttaaataacttttcttcagctattctgatatt 623

                                                                       
Query: 246 ttccatttaattctctgcttcgacagtgaaagttctaagaactcttctttcctaatacaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttccatttaattctctgcttcgacagtgaaagttctaagaactcttctttcctaatacaa 563

                                                                       
Query: 306 tgtcacaaggtggaaaacagccagacctagtctaaatttagtctttcaatttagatagtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtcacaaggtggaaaacagccagacctagtctaaatttagtctttcaatttagatagtt 503

                                                                       
Query: 366 tagtgaatcaaagaggttaagagtatggctaagtcaactcctttgaaggtgcaaaatgac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagtgaatcaaagaggttaagagtatggctaagtcaactcctttgaaggtgcaaaatgac 443

                                                                       
Query: 426 tgaataatgaccatgaaagcttcagtacacaatgagggttagaagtactggtttcctttt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgaataatgaccatgaaagcttcagtacacaatgagggttagaagtactggtttcctttt 383

                                                                       
Query: 486 gcactttttgttaattttctggactatatgtacattttttacagtgaaaactacaggttc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcactttttgttaattttctggactatatgtacattttttacagtgaaaactacaggttc 323

                                                                       
Query: 546 atctcttcatttgcaacaatcccacagttctccaccaactctcttcaaatacaaaactca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atctcttcatttgcaacaatcccacagttctccaccaactctcttcaaatacaaaactca 263

                                                                   
Query: 606 ctccacaaaatctgtgtacaactcctgaaattttgagcacccagcacacactgaag 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctccacaaaatctgtgtacaactcctgaaattttgagcacccagcacacactgaag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space:   684852
Effective search space used:   684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_i06.g1 MSMg01no148_i06.g1 CHROMAT_FILE:
MSMg01no148_i06.g1 PHD_FILE: MSMg01no148_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:26 2005
         (626 letters)



>mm_chr2_28937107_28938132
          Length = 1026

 Score = 1135 bits (587), Expect = 0.0
 Identities = 617/627 (98%), Gaps = 2/627 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgcctgcaacactgaaggaagtcagggcaggaattggaggcaggaacaaatgcagaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgcctgcaacactgaaggaagtcagggcaggaattggaggcaggaacaaatgcagaggc 260

                                                                       
Query: 61  tgggaacactgcttgcttaacctgcctccttatagcactcaggttctcccacattcagaa 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaacactgcttgcttaacctgcctccttatagcactcaggttctcccacattcagaa 320

                                                                       
Query: 121 acctgccccacatagtccagtttggtgggggcatttctccgttgaggttccctctttgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgccccacatagtccagtttggtgggggcatttctccgttgaggttccctctttgaa 380

                                                                       
Query: 181 aatgtttctggtttgtgtcagacataaaagtagccagcacagtttgacttttttt-gttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 aatgtttctggtttgtgtcagacataaaagtagccagcacagtttgacttttttttgttg 440

                                                                       
Query: 240 tttttgttttttaaatagaaaataggttacattgtgcagaataagagaggcatgaaaaag 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 441 tttttgttttttaaatagaaaataggttacattgtgcagaataagagaggcatggaaagg 500

                                                                       
Query: 300 aacagtgtgagtagccctctgaccacaggaaaccagccagagagttttctggtcccttcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagtgtgagtagccctctgaccacaggaaaccagccagagagttttctggtcccttcc 560

                                                                       
Query: 360 cagagcatttgtgcaagaggctacagaccctggaacatgtccaaccatcagaactcacag 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cagagcatttgtgcaagaggctacagaccctggaacatgtccaaccatcagaactcacgg 620

                                                                       
Query: 420 tgccctggaaccatgtctgaccatccgagctcactctggccctgcacttttctcctccac 479
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccctggaaccacatctgaccatccgagctcactctggccctgcacttttctcctccac 680

                                                                       
Query: 480 ctgaaagggtctccagggactgcctttcagagggcagctttgagggccagtctttttata 539
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgca-gggtctccagggactgcctttcagagggcagctttgagggccagtctttttata 739

                                                                       
Query: 540 atggttcctgttttcattctctcctcgctctctctccctctcctaccctcttactgctct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atggttcctgttttcattctctcctcgctctctctccctctcctaccctcttactgctct 799

                                      
Query: 600 ggctggcctgacctccctcctcccccg 626
           |||||||||||||||||||||||||||
Sbjct: 800 ggctggcctgacctccctcctcccccg 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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