BAC Information

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BAC

Clone NameMSMg01-148I15
Chromosome2 (Build37)
Map Location 25,447,804 - 25,448,172
singlet/doubletsinglet
Overlap geneB230208H17Rik
Upstream geneLOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887
Downstream gene4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I15.T7 (MSMg01no148_i15.b1)MSMg01-148I15.TJ (MSMg01no148_i15.g1)
ACCAG351502AG351503
length730749
length of high quality
(start - end)		375 (43 - 417)128 (70 - 197)
definitionCHROMAT_FILE: MSMg01no148_i15.b1 PHD_FILE: MSMg01no148_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:28 2005CHROMAT_FILE: MSMg01no148_i15.g1 PHD_FILE: MSMg01no148_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAGACCGCGGAATT
CCAGGTTTCCTCCAGATGGTAATGCTGCAGAAGATGTGAAGACCATATGC
CAGGACTATGGGGCCTGCCTGGCTCTTGTCTGGTTCTTCAGACCACTCCC
AGAGGAGTATGCTGCAAAACATCCTTAGGAGCTGGCTGCCAGAAGGAAGC
TTGGTGGCGGGATGCGTAGGCTTAGGTGTGACCCTTGACTTTGAAGTCAA
GCTACACTGCCCATCAAGTTCCTTTATCTTTCTTTGAAAACAGACCTCCA
GGTTCCTCCTATTTCCGCTATGCTGAATCTTCCATGAAGAACAGCTTTGG
TCTAAAGTACCTGCATAAGTTCTTCAACATCCCATTTTTGCAACTACAGG
TAAGTGCGTACTACCCCACGTAAAACAAAAGGGAAACAAAAGTCATCATT
TTTGTGACTCTGCACAAGAAGTGCCCTGCTTCCTAAGCCTGATAACACCC
TTGGGCACCTTCTTGGAAGCTGGCTACTGATGTATGTAATGAGCTGGACA
TGGCACACTCAGAACTCAGAGTAGTGTCCAAGAGTCCGGTAACATGTTCT
GCTCTCTACTGTCCTTGGAAGTCAGTATAGCCTGTATAGGGAGCCCCTGC
CCCCTGTGGGGTACCAATTGAAGCGCATACCTCATTTCCCAGATAATCAG
ATATGTTTGTAGGATTTCCTGTCACCCCCT

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTATATAACCAAGGATGACCTTGAATACCT
CATCCCTTCTGCCTCTGCCTTTTTGATGCTGGGATTACATGTGCGTGGTT
GCTCTCTATTATTTATTTTATTGAGATATGGTCTCTCTATGTAGATCAGT
GTGGACTTGAACTCACAAAGATCTGCTTATCTCTGTCTCCCCGAGTTGAG
CGCTGGGTTAATGGTAAATCTGCCATAATCTGCTGTTGCTCTGCATTTTG
ATAATCTAGGTAAACGTTTTTTCATCACTAGGCGGTGGCTCGTCTATGAT
TAACACAGATTGCTTTTGTGAACGTGGTCGAACTATCGCATTCCCTCTCA
TCAGGCTCCGCCCCCCATATCTAAGTCACATCATGTTGTTGCTCCCCACG
CCGCGATGTCATTCTCCCAACGTACTTATGTCTCTCTTCTATATGATTGA
CTGACCCCGCTTTCTGTCTCTTTCAGTGAGGAGCGGCTTCCTACAGGTGA
TCAAACCTCCTTCCGCTCTCTAAACAGGACTTTAAAAATTTTGCCCATCT
TTTTTGTGTTTTTCTTTTTTCTTCTATCCCCCTATTCGTAATCCTTCCGT
CATCACCGTTACTTTTATCCCGTGTTTCTCCTCTTGATCCTTTTTATTGG
TCGCCGCTCTCGCTTACTTTTGTTTTCCACTATCCGTTCTTTTGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i15.b1 MSMg01no148_i15.b1 CHROMAT_FILE:
MSMg01no148_i15.b1 PHD_FILE: MSMg01no148_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:28 2005
         (375 letters)



>mm_chr2_25447602_25448376
          Length = 775

 Score =  690 bits (357), Expect = 0.0
 Identities = 366/369 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccaggtttcctccagatggtaatgctgcagaagatgtgaagaccatatgccagg 62
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ggaattccaggtttccacgagatggtaatgctgcagaagatgtgaagaccatatgccagg 512

                                                                       
Query: 63  actatggggcctgcctggctcttgtctggttcttcagaccactcccagaggagtatgctg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actatggggcctgcctggctcttgtctggttcttcagaccactcccagaggagtatgctg 452

                                                                       
Query: 123 caaaacatccttaggagctggctgccagaaggaagcttggtggcgggatgcgtaggctta 182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taaaacatccttaggagctggctgccagaaggaagcttggtggcgggatgcgtaggctta 392

                                                                       
Query: 183 ggtgtgacccttgactttgaagtcaagctacactgcccatcaagttcctttatctttctt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtgtgacccttgactttgaagtcaagctacactgcccatcaagttcctttatctttctt 332

                                                                       
Query: 243 tgaaaacagacctccaggttcctcctatttccgctatgctgaatcttccatgaagaacag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgaaaacagacctccaggttcctcctatttccgctatgctgaatcttccatgaagaacag 272

                                                                       
Query: 303 ctttggtctaaagtacctgcataagttcttcaacatcccatttttgcaactacaggtaag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctttggtctaaagtacctgcataagttcttcaacatcccatttttgcaactacaggtaag 212

                    
Query: 363 tgcgtacta 371
           |||||||||
Sbjct: 211 tgcgtacta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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