Query= MSMg01no148_j09.b1 MSMg01no148_j09.b1 CHROMAT_FILE:
MSMg01no148_j09.b1 PHD_FILE: MSMg01no148_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:32 2005
(579 letters)
>mm_chr2_103815922_103816901
Length = 980
Score = 1035 bits (535), Expect = 0.0
Identities = 566/577 (98%), Gaps = 3/577 (0%)
Strand = Plus / Minus
Query: 4 gaattctctcttcctctcgttccctggatatttccctacgtacacttctccaaaccctat 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gaattctctcttcccctagttccctggatatttccctacgtacacttctccaaaccctat 720
Query: 64 cctttggtctgcccccacccccagaattttgtccttattctgaattccgtgttttttatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cctttggtctgcccccacccccagaattttgtccttattctgaattccgtgttttttatt 660
Query: 124 ctcttacctttaaaaacattggtgatttaccgtgcagtgatgtgtctctgcaaacatagc 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 659 ctcttacctttaaaaacattggtgatttaccatgcagtgatgtgtctctgcaaacatagc 600
Query: 184 cacagtagaggaagaactcacggcttctctgaagaggcagctgaagctcagcctccacag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacagtagaggaagaactcacggcttctctgaagaggcagctgaagctcagcctccacag 540
Query: 244 cctaggccccttaggcagacacctcaggagctagagac--tgtatccaaccccggatgtg 301
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 539 cctaggccccttaggcagacacctcaggagctagagactatgtatccaaccccggatgtg 480
Query: 302 ccccagaagtgtgagggatatacctgagatagtctctcctgcacaatttccgtcccagct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccccagaagtgtgagggatatacctgagatagtctctcctgcacaatttccgtcccagct 420
Query: 362 tgtagtacacccccctccccacctctcccagccgacacccacagaggtcacagctgaggc 421
||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtagtagaggcgcctccccacctctcccagccgacacccacagaggtcacagctgaggc 360
Query: 422 aatcctcatgccagtactggtcgatggctttcaggaagtagcggtcccctatgttctgct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatcctcatgccagtactggtcgatggctttcaggaagtagcggtcccctatgttctgct 300
Query: 482 ggcagccaccacatgtcagcagggatgggggtatctgcagcacctcatccacgggttccc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggcagccaccacatgtcagcagggatgggggtatctgcagcacctcatccacgggttccc 240
Query: 542 tggggaagaggccaagcattatgatatgctgcctgaa 578
||||||||| ||||||||||| |||||||||||||||
Sbjct: 239 tggggaaga-gccaagcattaggatatgctgcctgaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no148_j09.g1 MSMg01no148_j09.g1 CHROMAT_FILE:
MSMg01no148_j09.g1 PHD_FILE: MSMg01no148_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:32 2005
(563 letters)
>mm_chr2_103666565_103667527
Length = 963
Score = 1000 bits (517), Expect = 0.0
Identities = 555/571 (97%), Gaps = 9/571 (1%)
Strand = Plus / Plus
Query: 1 ctaatcagaaagaaatggtgct--agcctcatataattgatacaaagcaaaggtgttgct 58
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctaatcagaaagaaatggtgctggagcctcatataattgatacaaagcaaaggtgttgct 253
Query: 59 aatcactg-----tttttttctggttctgctgctgagagaggaggaactgttggtgagaa 113
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 254 aatcactgtttgttttttttctggttctgctgcttagagaggaggaactgttggtgagaa 313
Query: 114 ctaacaggctttacagtctttggatctctctttggcttcctccactgataactaaagttg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 ctaacaggctttacagtctttggatctctctttggcttcctccactgataactaatgttg 373
Query: 174 ataggggaacctttagtcctgaatgtggcctctaaagagttcaaggcctcgcccacacct 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ataggggaacctttagtcctgaatgtggcctctaaagagttcaaggcctcgcccacacct 433
Query: 234 gccagtgtgaggccaaatcttttaagttcagactccttgggctggagagatggctcagca 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gccagtgtgaggccaaatcttttaagttcagactccttgggctggagagatggctcagca 493
Query: 294 gtaaagagcactgactgctcttccagaggt-cctgagttcaattcccagcacccgcatgg 352
|||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 494 gtaaagagcactgactgctcttccagaggtacc-gagttcaattcccagcaatcacatgg 552
Query: 353 tggctcacaaccatctgtaacggtctctgatgccctcttctggtgtgtctgaagacatga 412
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 553 tggctcacaaccatctgtaacggtctctgatgccctcttctggtgtgtttgaagacatga 612
Query: 413 cagtgtacccatatacttaaataaaaatcttaaacaacaacaacaaaaaagacatataat 472
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 613 cagtgtacccatatacttaaataaaaatcttaaacatcaacaacaaaaaagacatataat 672
Query: 473 atcaaaatacaacgaattctaactaatcagtagtcattttgtaggggttacagacagcct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atcaaaatacaacgaattctaactaatcagtagtcattttgtaggggttacagacagcct 732
Query: 533 taaagataatccaaaaggggctggagttaag 563
|||||||||||||||||||||||||||||||
Sbjct: 733 taaagataatccaaaaggggctggagttaag 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
