BAC Information

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BAC

Clone NameMSMg01-149E24
Chromosome2 (Build37)
Map Location 157,591,582 - 157,592,031
singlet/doubletsinglet
Overlap geneCtnnbl1
Upstream geneMyl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
Downstream geneLOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149E24.T7 (MSMg01no149_e24.b1)MSMg01-149E24.TJ (MSMg01no149_e24.g1)
ACCAG352066AG352067
length693691
length of high quality
(start - end)
450 (74 - 523)473 (76 - 548)
definitionCHROMAT_FILE: MSMg01no149_e24.b1 PHD_FILE: MSMg01no149_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:32 2005CHROMAT_FILE: MSMg01no149_e24.g1 PHD_FILE: MSMg01no149_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGG
AATTCTTCAATCTTGCGGGAAAGTACCCCAAAATATAGAGCCCCCAGCCA
TTCCAATCAACCAATCAATCAATAAAAGTACAGAGGCCACAGTAACTACT
GGGCAGTCTACTGTCCACAATGAGAGGAAATATGGTAACATCAAAACCGA
AGGTAAGATGGCAAAATAGCAATCTCCCTCCAAAGACCTGATTCAAGAGA
TCGGTCAGCAGAAGGAAACAACAGAACCTACTGCAAAGAGAGAAAAAGAG
AAGGCAGGATCCCTGCAAAGCTGGAGAAGAGGACAGACAACGCACTAAAG
AGGCTCCAGCCCAACTCAGCTCCAACCACCAGCTTCCAGCATGGGGGGTG
GGGTGGGCAGTAGAAGACCTTAAGGTAAGCTGGGCGGCTCTGTGGGGGAG
ACACTAACAAACCCACTATCTTTAGGAGAAGCACACAGAACTCATGAGCT
TCAAACCAATTTCCAGGTTAGTGAGACAGTGAGTGCTCTGGCAGACAGGT
TGGCAGTGAATTTTGTCCGTGTGACTGACTCCACGTACAGGGACCTGCCA
TCTTGAAAGAGAACCCACTGTTTGAACTGTACAACCCTGGAAGCTGGGGA
ACATAGGCTCAACCCCTAGTCTCAGCCCGAAATTAATTTGCCA
NCTCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTCAATTTGTGTTTTCTTTATTGC
TTCCATTTTTAGTTTCAGGTCTTAATAGTTTTATTCATTTCCTTAAACTT
TTTTTTTTTTTGGCTTTAAGAGATTGTTCATTTCCTTTAGTTTTTTGTTT
GTCTTTCTTTTGCTTTCTTTAAGGGATTTATTCATTTCTTCTTTAAGAAC
CTCTATTATCTTCATAAAGTTGGTTTTAAGGTCTTCTCATACTTCAGCTG
TGTTGGAATATTCAGGGCTTTCTGTATGATGGACACCTGGGCTCTGGTGG
TGATATATTGTCTTGGCTGCTGCTGATTGTGTTCTTACGCTGGTGTCTAG
GCATCTGGATTTGGGTGATTATAGGTCTAGGTGCCATTTTCTGAGTTTAA
CTTTGTTGGCTGTGTTTTGTTCCTTGGTTTCTGTTTCCTCTCTGATCTTT
TGGTCTGTGTGGCCTCTGGTCTAGCAGGGAGTCACCACCCGAGTTGGGGC
TGGTGTTCTAGTGGCTGTGAGGACTCTGGTTAGGCAGTGCGTCTCCACCT
GGGGTCATCTACCTGTTCTGTCAGGCATGGTCTGCATTTTGGCCCTTGTT
TTATCCTTTTAAAAATATACTACTTGAGCGGTCACATACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_e24.b1 MSMg01no149_e24.b1 CHROMAT_FILE:
MSMg01no149_e24.b1 PHD_FILE: MSMg01no149_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:32 2005
         (450 letters)



>mm_chr2_157591382_157592231
          Length = 850

 Score =  855 bits (442), Expect = 0.0
 Identities = 448/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taccccaaaatatagagcccccagccattccaatcaaccaatcaatcaataaaagtacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 taccccaaaatatagagcccccagccattccaatcaaccaatcaatcaataaaagtacag 591

                                                                       
Query: 61  aggccacagtaactactgggcagtctactgtccacaatgagaggaaatatggtaacatca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aggccacggtaactactgggcagtctactgtccacaatgagaggaaatatggtaacatca 531

                                                                       
Query: 121 aaaccgaaggtaagatggcaaaatagcaatctccctccaaagacctgattcaagagatcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaaccgaaggtaagatggcaaaatagcaatctccctccaaagacctgattcaagagatcg 471

                                                                       
Query: 181 gtcagcagaaggaaacaacagaacctactgcaaagagagaaaaagagaaggcaggatccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtcagcagaaggaaacaacagaacctactgcaaagagagaaaaagagaaggcaggatccc 411

                                                                       
Query: 241 tgcaaagctggagaagaggacagacaacgcactaaagaggctccagcccaactcagctcc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcaaagctggagaagaggacaggcaacgcactaaagaggctccagcccaactcagctcc 351

                                                                       
Query: 301 aaccaccagcttccagcatggggggtggggtgggcagtagaagaccttaaggtaagctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaccaccagcttccagcatggggggtggggtgggcagtagaagaccttaaggtaagctgg 291

                                                                       
Query: 361 gcggctctgtgggggagacactaacaaacccactatctttaggagaagcacacagaactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gcggctctgtgggggagacactaacaaacccactatctttaggagaagcacacagaactc 231

                                         
Query: 421 atgagcttcaaaccaatttccaggttagtg 450
           ||||||||||||||||||||||||||||||
Sbjct: 230 atgagcttcaaaccaatttccaggttagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)